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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtggtggcttctccaaagattattttattggtgaacctgtgtgcaaatcttaagcaaaatgtatcttcagCCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAG

Basic information

species Zea mays
transcript GRMZM2G014994_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014994_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g48990.1 (Oryza sativa), 3'ss of exon 8
------------------gttggtggtggcttctccaaagattat-tttattggtgaacctgtgtgcaaatcttaagcaaaatgtatcttcagCCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAG
                   |  ||  |      | ||||  | |  ||| ||||||  |    ||||    ||||  ||| || ||| | ||||||| | || || |   |||||||||| ||||| || |||| ||| ||||| |||||| | || |||||||| |||||||||||||||| ||| ||||||
gttggtgattgtgatcttatatgttattttgatttcaaatgtaagatttgttggtgttctgtggtgcctggcttac-caacatatatatgcagCCAACTACCAGAGTTTCTTGGTGGTTCTTGCACGTGCTCTAGCCAGGGAGGATGCCTGCGATCCAACAAAGGCCCCTGGAGTGATCCTTTAATTATGAAG

upper sequence: GRMZM2G014994_T03 (Zea mays), 3'ss of exon 7
lower sequence: AT5G56160.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------------gttggtggtggcttctccaaagattattttattg---gtgaacctgtgtgcaaat--cttaagcaaaatgtatcttcagCCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAG
                                     |||  | | || ||    ||| ||   |||| |   |  ||| |  ||    ||  |||        | | | | ||| ||| | || || | ||| || || | ||||| |||| ||||| | ||||||||| |||||||||||||||| ||||||| |||||||  |||| |  ||
gttaattttttatagctcacctcatagagtttttgttttgtagatagcctcattcaagttttggttatggcatgctaacattagtatttattgcttttctttcctctctgtacagTCAACTTCCAGAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAAGGACCCTGGAATGATCCTGAAATAGTTGAG

upper sequence: GRMZM2G014994_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 8
---------------------------gttggtggtggcttct----ccaaagattattttattggtgaacctgtgtgcaaatcttaagcaaaatgtatcttcagCCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAG
                           |||  |  |   || |     | ||   |||||  |   || |  | | | ||  | ||   |    |   | ||||| ||| |||| || | ||| ||||| || ||||||||| |||   |||| ||||||||||||||||| |||||||| |||| |||||||  ||||||||||
gtttgtgtttcacgctcattctgttttgttaatactccattttgatttctaattctatttgttccttgcatttttcttcattttttcccc----ttcttgttcagTCAACTGCCTGACTTCTTGGGTGGCTCTTGCACATGTGCTACTGATGGTGGGTGCCTGAGGTCTAATAAAGGTCCATGGAATGATCCTGAAATAATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagattattttattggtgaacctgtgtgcaaatcttaagcaaaatgtatcttcagCCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAG
                                              tatcttc  CT-rich tract
     tattttatt  TA-rich tract