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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtaaaccataaggttttgatagttcatgtgcgcgacttatttttttgccattttatatattcttttcgccgtattagtactaaattagcagcatttgtcttgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTAGGGCATAGGCTCTCAGATAACCACTGGGAACTTAGGGACTTCTCTGCCA

Basic information

species Zea mays
transcript GRMZM2G013908_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013908_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 3'ss of exon 7
gtaagtagtaaaccataaggttttgatagttcatgtgcgcgacttattt---ttttgccattttatatat-tcttttcgccgtattagtactaaattagcagcatttgtcttgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTAGGGCATAGGCTCTCAGATAACCACTGGGAACTTAGGGACTTCTCTGCCA
|||||| ||  | ||      ||||||  ||| |     | | || |||   ||||  ||||  | |  | | ||| |  | ||||  | |||||  | ||  |||| |||||||    ||||||| ||| ||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||||||| |
gtaagtggttgatcagtcaactttgatgcttc-tactttctagttgttttgtttttagcattgcacacttatgtttgcagcatatttctgctaaagaaacaaaatttctcttgattgccagTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661346|gb|BM501365.1|BM501365
EST:     GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTAT                         TTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
genomic: GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagta ... tgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
EST: gi|76283812|gb|DV023380.1|DV023380
EST:     GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTAT                         TTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
genomic: GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagta ... tgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
EST: gi|26455852|gb|CA827435.1|CA827435
EST:     CTTCTCCGTAATCCACATATTCATATTGAACCTTAT                         TTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
genomic: CTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagta ... tgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattcttttcgccgtattagtactaaattagcagcatttgtcttgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTAGGGCATAGGCTCTCAGATAACCACTGGGAACTTAGGGACTTCTCTGCCA
                                      tttgtctt  CT-rich tract
                tattagtactaaatta  TA-rich tract