1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attccaattcctcgaaatgaaaggaaacaaacggggcctaagtgatctagaaaaaaagtagtttcttcactctaatctgacttgttggaactgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGGCTGGCGCTACCTGTAGCCACAAGAAACTTCGCAGTAGATGGCTATGTA
species | Zea mays |
transcript | GRMZM2G013607_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|32804380|gb|CD956616.1|CD956616
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|32804660|gb|CD956896.1|CD956896
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|213170721|gb|FM187986.1|FM187986
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|32827253|gb|CD966931.1|CD966931
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|32804985|gb|CD957221.1|CD957221
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGTAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|76294067|gb|DV033635.1|DV033635
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|76018911|gb|DT946081.1|DT946081
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGCCCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGEST: gi|32804794|gb|CD957030.1|CD957030
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
tctagaaaaaaagtagtttcttcactctaatctgacttgttggaactgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGGCTGGCGCTACCTGTAGCCACAAGAAACTTCGCAGTAGATGGCTATGTA
atctgac putative branch site (score: 3)
aaaaaaagtagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccaattcctcgaaatgaaaggaaacaaacggggcctaagtgatctagaaaaaaagtagtttcttcactctaatctgacttgttggaactgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCGGCTGGCGCTACCTGTAGCCACAAGAAACTTCGCAGTAGATGGCTATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA