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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaacatagtacattagtactatttgctagagtagaactgtatgactatatggcacacaagtgtcttacagttcttcatctttgcttatgtaaattccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG

Basic information

species Zea mays
transcript GRMZM2G013115_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013115_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g50750.2 (Oryza sativa), 3'ss of exon 7
aaaacatagtacattagtactatttgctagagtagaactgt---atgactatatggcacacaagtgtcttaca-gttcttcatctttgcttatgtaa--------attccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG
     ||    | || | ||   ||  || |||||||| |    || |  |||||    | || | |||||   ||  |||  | ||  || |  ||         || |||  ||||||||  |||||||||||||||| |||||||||||||| |||||||| ||||||
----tattcctctttggcacc--ttaatatagtagaacaggagaataataatatgctgaagaaatttcttatgtgtgtttccccctttattttccaactgatgcagTTTCAGCTAGGCGAACCAGTAGCTGGTGTTTCGATGAGAAAGTTCTGATACAGTCACTTTACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatatggcacacaagtgtcttacagttcttcatctttgcttatgtaaattccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG
                 gtcttac  putative branch site (score: 3)
                                        ttatgtaaatt  TA-rich tract