Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctcatctttgttcctagcaagcatagttgtacctttgtttttccttgtgcagttaatgaatcctttaaaaaaaaattgcacgcaattgccaacctgagaacatttagtttgcctaatgtacagCACTATTCCCACTTGTTCTTCAGTTTGCCTAATGTACTGAGTCTGTCACTTAGATGGGACTGTGGCATGTTCATGCTCAAATACATTGACTTCTACAGCA

Basic information

species Zea mays
transcript GRMZM2G012601_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012601_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g25370.1 (Oryza sativa), 3'ss of exon 7
gtacttctc---atctttgttcctagcaagcatagttgtacctttgtttttccttgtgcagttaatgaatcctttaaaaaaaaattgcacgcaattgccaacctgagaacatt---tagtttgcctaatgtacagCACTATTCCCACTTGTTCTTCAGTTTGCCTAATGTACTGA----------GTCTGTCACTTAGATGGGACTGTGGCATGTTCATGCTCAAATACATTGACTTCTACAGCA--------------------------
||| || ||   || ||| || |||| | |  ||   ||     |      | || | || |    |||    ||         ||  | | |  ||| |  || ||||||||   |||||  ||  | | | | | | ||| | |    |||   | ||||| ||||||||| |          | ||  || |||| ||||| |||||||||||||||||||||||||| || ||||||||||                          
gtatttttctcaatttttttttctagtatgtgtatcagtcttgctaaccaacattatacaatagtagaacttgttttttcc---tttaaaggaggtgcaattctaagaacattatatagttcaccacaggcatatcgc-attactatgccttcgaaaatttgcgtaatgtactcattacttggttgccttccatttagGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGATATGGGCCTTACTTTTGGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88748344|gb|DY532485.1|DY532485
EST:     CTTTCATGGAAGCAGGAAAGTGTTGAAAATCTTCCTTTGCAGGAGAATGG                         CACTATTCCCACTTGTTTTTCAGTTTGCCTAATGTACTGAGTCTGTCACTT
genomic: CTCTCATGGAAGCAGGAAAGTGTCGAAAATCTTCCTTTGCAGGAGAATGGgtacttctca ... taatgtacagCACTATTCCCACTTGTTCTTCAGTTTGCCTAATGTACTGAGTCTGTCACTT
EST: gi|113703135|gb|EE680639.1|EE680639
EST:     CTCTCATGGAAGCAGGAAAGTGTCGAAAATCTTCCTTTGCAGGAGAATGG                         CACTATTCCCACTTGTTCTTCAGTTTGCCTAATGTACTGAGTCTGTCACTT
genomic: CTCTCATGGAAGCAGGAAAGTGTCGAAAATCTTCCTTTGCAGGAGAATGGgtacttctca ... taatgtacagCACTATTCCCACTTGTTCTTCAGTTTGCCTAATGTACTGAGTCTGTCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaattgcacgcaattgccaacctgagaacatttagtttgcctaatgtacagCACTATTCCCACTTGTTCTTCAGTTTGCCTAATGTACTGAGTCTGTCACTTAGATGGGACTGTGGCATGTTCATGCTCAAATACATTGACTTCTACAGCA
                                          gcctaat  putative branch site (score: 3)
                                       tttgcct  CT-rich tract
                                 atttagttt  TA-rich tract