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gtaacccaataacccgtatcttgctccatataaaactaggtaaatatgggaattcctaaaatataatggacaatttgcagGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTGATTTTCTGGAATCATCCCTCAGACATAAAGCAGAAATGGTGGCTTTGG
species | Zea mays |
transcript | GRMZM2G012501_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAG GTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTEST: gi|211106005|gb|FK992440.1|FK992440
genomic: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAGgtaacccaat ... caatttgcagGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTT
EST: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAG GTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTEST: gi|67016076|gb|CO444825.1|CO444825
genomic: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAGgtaacccaat ... caatttgcagGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTT
EST: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAG GTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTEST: gi|148970762|gb|EE021504.2|EE021504
genomic: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAGgtaacccaat ... caatttgcagGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTT
EST: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAG GTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTEST: gi|148967121|gb|EE018293.2|EE018293
genomic: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAGgtaacccaat ... caatttgcagGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTT
EST: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAG GTTATGTGTGAGTCAAGCATGAAC
genomic: CTGTCCGTTCTCCTCTTGCACAATGTCTTCTGATTCGTTACACAAGCCAGgtaacccaat ... caatttgcagGTTATGTGTGAGTCAAGCATGAAC
ccatataaaactaggtaaatatgggaattcctaaaatataatggacaatttgcagGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTGATTTTCTGGAATCATCCCTCAGACATAAAGCAGAAATGGTGGCTTTGG
tcctaaa putative branch site (score: 2)
aattcctaaaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacccaataacccgtatcttgctccatataaaactaggtaaatatgggaattcctaaaatataatggacaatttgcagGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTGATTTTCTGGAATCATCCCTCAGACATAAAGCAGAAATGGTGGCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG