1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatattaagtaattgtttttttatatatatttcacattgaatgcttggcaacaagagatgtgagcttgtgtcctaattgttttgatttggagcattaaattagGTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGATGCTCTGCAATTGATGAAATCGATAAGCATGGAACCTTTCTTTTACCAA
species | Zea mays |
transcript | GRMZM2G011912_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGATTTCAGAGAATACTCCTTTCTTGAGAATCCATCATTACCTAAAGAG GTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGAEST: gi|71309664|gb|DR791110.1|DR791110
genomic: TTGATTTCAGAGAATACTCCTTTCTTGAGAATCCATCATTACCTAAAGAGgtaatattaa ... attaaattagGTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGA
EST: TTGATTTCAGAGAATACTCCTTTCTTGAGAATCCATCATTACCTAAAGAG GTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGAEST: gi|19058631|gb|BM737298.1|BM737298
genomic: TTGATTTCAGAGAATACTCCTTTCTTGAGAATCCATCATTACCTAAAGAGgtaatattaa ... attaaattagGTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGA
EST: TTGATTTCAGAGAATACTCCTTTCTTGAGAATCCATCATTACCTAAAGAG GTGAAAGATTCGTTACTCGAGGTTGAACTTTGNGACGAGCATAGCTCCAGA
genomic: TTGATTTCAGAGAATACTCCTTTCTTGAGAATCCATCATTACCTAAAGAGgtaatattaa ... attaaattagGTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGA
caacaagagatgtgagcttgtgtcctaattgttttgatttggagcattaaattagGTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGATGCTCTGCAATTGATGAAATCGATAAGCATGGAACCTTTCTTTTACCAA
taattgttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattaagtaattgtttttttatatatatttcacattgaatgcttggcaacaagagatgtgagcttgtgtcctaattgttttgatttggagcattaaattagGTGAAAGATTCGTTACTCGAGGTTGAACTTTGTGACGAGCATAGCTCCAGATGCTCTGCAATTGATGAAATCGATAAGCATGGAACCTTTCTTTTACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA