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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttcatttgaggtttaatcaagagtaaacctaagtttaattaggctttttagaaccatagtattttcttaaaaaatcatttgtctgccttttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGACACTTGTAACAGTTAAAAAGGCTCATCTTGGTATTGTTACTACGCTGACC

Basic information

species Zea mays
transcript GRMZM2G011364_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011364_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g39650.1 (Oryza sativa), 3'ss of exon 7
gttcatttg-aggtttaatcaagagtaaacctaagttta--attaggctttttagaaccata-----gtattttcttaaaaaatcatttgtctgcctttt-gtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGACACTTGTAACAGTTAAAAAGGCTCATCTTGGTATTGTTACTACGCTGACC
     |  | |  || |||||| ||   ||   | ||||  |||| |||| ||   |  ||      | |  ||||  ||   | |||||| ||| |||   | |  |||||||| || ||||||||||| || ||| |  | |||||| | |||||| | |||||||||||||||||||| |||||||| ||| |||||||  || | 
----gtgagcaaattcaatcaacagcttactgcattttatgattaagcttattgagattatgtggatgcaccttctagaagcctaatttgtttgcatttccatatccagTGGAACTATTGAAGGAAGCATTATTGTACTAAGTTCAAAAAATATGCGGTCGCTTGTAACAGTTAAAAAGGCACATCTTGGCATTATTACTACATTGGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469466|gb|DY235836.1|DY235836
EST:     GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|148957846|gb|EC903996.2|EC903996
EST:     GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|86473129|gb|DY239499.1|DY239499
EST:     GCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|5871274|gb|AW017745.1|AW017745
EST:     CTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: CTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|149096645|gb|EE182410.2|EE182410
EST:     GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|32945451|gb|CF050270.1|CF050270
EST:     GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|6020933|gb|AW065861.1|AW065861
EST:     GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|149070572|gb|EE158978.2|EE158978
EST:     GCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|78021573|gb|DV489960.1|DV489960
EST:     GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GAGGCAATTTCAGCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
EST: gi|110219160|gb|EC901058.1|EC901058
EST:     GCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAAT                         TGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC
genomic: GCTTTTGCTGTGTCACCCAACGGTGCTCTTCTTGCAATgtgagattgg ... ttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagaaccatagtattttcttaaaaaatcatttgtctgccttttgtttatagTGGAACAATAGAAGGAAGCATCATCGTAGTTGGCTCAAAAGACATGCGGACACTTGTAACAGTTAAAAAGGCTCATCTTGGTATTGTTACTACGCTGACC
                                 tttgtctgcctttt  CT-rich tract
           atagtattttcttaaa  TA-rich tract