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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcgataataaccagcctatgtggttcacggccatgttcatctgttgatgaagaggcgagggcaacttaattcattgtctaaaagaaaggatgtgtgctgttttgttccttggtgcagGTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG

Basic information

species Zea mays
transcript GRMZM2G011078_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76927248|gb|DV171197.1|DV171197
EST:     CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAG                         GTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
genomic: CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAGgtacgcgata ... cttggtgcagGTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
EST: gi|76280658|gb|DV020226.1|DV020226
EST:     CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAG                         GTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
genomic: CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAGgtacgcgata ... cttggtgcagGTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
EST: gi|78092064|gb|DV520438.1|DV520438
EST:     CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAG                         GTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
genomic: CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAGgtacgcgata ... cttggtgcagGTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
EST: gi|78080153|gb|DV508565.1|DV508565
EST:     CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAG                         GTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
genomic: CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAGgtacgcgata ... cttggtgcagGTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCG
EST: gi|76928466|gb|DV171634.1|DV171634
EST:     CCTGTTTTGGAACATAATCTGCGTTACCGCTGCCTGGGCAAAAGGGTCAG                         GTCCAAAGATATGGTTTCT
genomic: CCTGTTTTGGAACATAATCTGCATTACTGCTGCCTGGGCAAAAGGGTCAGgtacgcgata ... cttggtgcagGTCCTAAGATATGGTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttaattcattgtctaaaagaaaggatgtgtgctgttttgttccttggtgcagGTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG
             gtctaaa  putative branch site (score: 3)
                                  ctgttttgttcctt  putative PPT
                taaaagaaa  TA-rich tract