1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtatcagtttgttaagaggtactagccatttttaagatatccatgcctgcccactacgtttgaagttatttctgacgtttctttcactggtgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGATGACAAGTTCATGGACATGTTTGTCGCGCCTGGGGCAGTTGATGCTATT
species | Zea mays |
transcript | GRMZM2G010306_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATG CCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGAEST: gi|76287655|gb|DV027223.1|DV027223
genomic: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgttcaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGA
EST: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATG CCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGAEST: gi|76284004|gb|DV023572.1|DV023572
genomic: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgttcaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGA
EST: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATG CCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGAEST: gi|241994771|gb|GR421124.1|GR421124
genomic: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgttcaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGA
EST: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATG CCGTGAAAGGTTATTTCTGGCACTCGGCTTCGAGCTATTCGCTGTGAGTGAEST: gi|76284003|gb|DV023571.1|DV023571
genomic: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgttcaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGA
EST: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATG CCGTGAAAGGTTATTTTTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGAEST: gi|71309873|gb|DR791220.1|DR791220
genomic: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgttcaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGA
EST: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATG CCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGA
genomic: ATTGAAAGAAATGTCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgttcaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGA
cctgcccactacgtttgaagttatttctgacgtttctttcactggtgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGATGACAAGTTCATGGACATGTTTGTCGCGCCTGGGGCAGTTGATGCTATT
ttctgac putative branch site (score: 5)
aagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcagtttgttaagaggtactagccatttttaagatatccatgcctgcccactacgtttgaagttatttctgacgtttctttcactggtgaaatgcagCCGTGAAAGGTTATTTCTGGCACTCGGCTTTGAGCTATTCGCTGTGAGTGATGACAAGTTCATGGACATGTTTGTCGCGCCTGGGGCAGTTGATGCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - -tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - ccactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga