Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctcttggctacacggtgcagctagtactagcttagatggagtctgccagtctagtattcaatttgggctctgaatgtggtttgcttttaacttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG

Basic information

species Zea mays
transcript GRMZM2G009940_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009940_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 3'ss of exon 6
gctcttggctacacggtgcag-ctagtactagcttagatggagtctgccagtctagtattcaatttgggctctgaatg-tggtttgcttttaact----tgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG
        ||| |  | || | ||||     |       |  ||    ||   |  |  | ||| |    | |   || ||||  | || |        ||||||||| ||||| || || || ||| | ||| | ||||| || |||||||| |||||||||||||||||| | ||| | ||  || ||||| | || | ||| |
------atctagatagggcgggctagaggggggagctgggtggtgcatcaaattcatggtgaatgtaatatgttggtgatggtgagtttgtggtgtaaatgaacagGGGGCGGCCACCACTTGTTATGTTGCATTGCACCCACAGGTGAAGGGTGTGTCCGGGAAGTACTTCAGTGACAGCAATGTGAACGAGGCGAGTGAGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211301865|gb|FL439779.1|FL439779
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18169878|gb|BM339718.1|BM339718
EST:     CCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: CCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|76280839|gb|DV020407.1|DV020407
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATG
EST: gi|32165056|gb|CD670374.1|CD670374
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|60347345|gb|DN214318.1|DN214318
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|78078135|gb|DV506550.1|DV506550
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18648910|gb|BM497729.1|BM497729
EST:     CCATCGGACGCTGGGTAAA-TGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: CCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|78084859|gb|DV513252.1|DV513252
EST:     TTCTCCATCGGACGCGGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18168960|gb|BM338800.1|BM338800
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18654711|gb|BM499516.1|BM499516
EST:     TTCTCCATCGGACGCTGGGTAAA-TGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18654712|gb|BM499517.1|BM499517
EST:     ATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: ATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|78106300|gb|DV524718.1|DV524718
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAA-TGCTGAGCAG                         GGTGCGGCAACTACATGCT
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCT
EST: gi|211543309|gb|FL433009.1|FL433009
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGCTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|91875958|gb|EB405915.1|EB405915
EST:     TTTTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGGGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|78106299|gb|DV524717.1|DV524717
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|17931047|gb|BM268007.1|BM268007
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|94472469|gb|EB701427.1|EB701427
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGGTGAGCAG                         GGTGCGGCAAGTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|32862954|gb|CF002636.1|CF002636
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|67015441|gb|CO444190.1|CO444190
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|9733746|gb|BE512498.1|BE512498
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGCTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|76280838|gb|DV020406.1|DV020406
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|5058970|gb|AI737446.1|AI737446
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGCTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|17931680|gb|BM268640.1|BM268640
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|166694247|gb|EG252120.1|EG252120
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGCTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATACTAT
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTAT
EST: gi|71759253|gb|DR957190.1|DR957190
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18661695|gb|BM501532.1|BM501532
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|71438305|gb|DR819355.1|DR819355
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|78023811|gb|DV492198.1|DV492198
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGCTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|94475917|gb|EB704875.1|EB704875
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|74244969|gb|DT652883.1|DT652883
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|71317601|gb|DR795544.1|DR795544
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18654530|gb|BM499335.1|BM499335
EST:     TCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18654552|gb|BM499357.1|BM499357
EST:     ATGTTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: ATGTTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18650256|gb|BM499075.1|BM499075
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|13249759|gb|BG360664.1|BG360664
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|60343084|gb|DN210057.1|DN210057
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGCTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|18648898|gb|BM497717.1|BM497717
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|12969391|gb|BG266335.1|BG266335
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGCTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|78105169|gb|DV523587.1|DV523587
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGC
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGC
EST: gi|14243090|gb|BG840724.2|BG840724
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
EST: gi|14242863|gb|BG840270.2|BG840270
EST:     TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAG                         GGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG
genomic: TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 92

TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 291

TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 353

TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 56

TTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGgtatttttaa ... acttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccagtctagtattcaatttgggctctgaatgtggtttgcttttaacttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG
                                        ttttaac  putative branch site (score: 56)
          tattcaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctcttggctacacggtgcagctagtactagcttagatggagtctgccagtctagtattcaatttgggctctgaatgtggtttgcttttaacttgaacagGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACG

gctcttg
- - - -gctacac
- - - - - - - ggtgcag
- - - - - - - - - - - - - - - - - - - - - tctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg