1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttactagtttagcttggtaacttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAG
species | Zea mays |
transcript | GRMZM2G008611_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAAGAAAACAGGACGATCCAEST: gi|32927422|gb|CF032234.1|CF032234
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCA-GAAAACAGGACGATCCA
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGTTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32940921|gb|CF045740.1|CF045740
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGCTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32927656|gb|CF032468.1|CF032468
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32927013|gb|CF031825.1|CF031825
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32850873|gb|CD990554.1|CD990554
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32850928|gb|CD990609.1|CD990609
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|6270004|gb|AW157975.1|AW157975
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGEST: gi|32927394|gb|CF032206.1|CF032206
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32928054|gb|CF032866.1|CF032866
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32928740|gb|CF033552.1|CF033552
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|33092403|gb|CF052397.1|CF052397
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGCGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|32846545|gb|CD986226.1|CD986226
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTCGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGCTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|211381738|gb|FL482095.1|FL482095
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGEST: gi|166597480|gb|EG133910.1|EG133910
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGACTAGTGTTATGTGGGACCAGAAAACAGGACGEST: gi|166658931|gb|EG233793.1|EG233793
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATG-CTAGTGTTATGTGGGACCAGAAAACAGGACG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGEST: gi|32928010|gb|CF032822.1|CF032822
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACG
EST: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
acttgtgcagtacatgacatgtctatttactagtttagcttggtaacttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAG
tggtaac putative branch site (score: 2)
cttttgc CT-rich tract
tatttactagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttactagtttagcttggtaacttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT