1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattttcgttggtacctttttgcctatagctaaataatgtgttgttgctaaatcttactcacactggtgcagGAAAGTGACGATTACTGGAACACCCGAAGCTATCCGGACCGCGGAGTCCATGATCATGCAGAGGGTGTCAGCCAGTTCAGAGAGGTGATGAGCCCCTTCT
species | Zea mays |
transcript | GRMZM2G008410_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGACATCTGACAG GAAAGTGACGATTACTGGAACACCCGAAGCTATCCGGACCGCGGAGTCCATEST: gi|87151880|gb|DY396669.1|DY396669
genomic: GGGACATCTGACAGgtattttcgt ... actggtgcagGAAAGTGACGATTACTGGAACACCCGAAGCTATCCGGACCGCGGAGTCCAT
EST: CGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGACATCTGACAN GATAGTGACGATTACTGGGACACCCGAAGCTATCCEST: gi|60394388|gb|DN227258.1|DN227258
genomic: CGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGACATCTGACAGgtattttcgt ... actggtgcagGAAAGTGACGATTACTGGAACACCCGAAGCTATCC
EST: CGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGACATCTGACAG GAAAGTGACGATTACTGGAACACCCGAAGCTATCCGGACCGCGGAGTCCAT
genomic: CGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGACATCTGACAGgtattttcgt ... actggtgcagGAAAGTGACGATTACTGGAACACCCGAAGCTATCCGGACCGCGGAGTCCAT
ttttgcctatagctaaataatgtgttgttgctaaatcttactcacactggtgcagGAAAGTGACGATTACTGGAACACCCGAAGCTATCCGGACCGCGGAGTCCATGATCATGCAGAGGGTGTCAGCCAGTTCAGAGAGGTGATGAGCCCCTTCT
tactcac putative branch site (score: 166)
tatagctaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttcgttggtacctttttgcctatagctaaataatgtgttgttgctaaatcttactcacactggtgcagGAAAGTGACGATTACTGGAACACCCGAAGCTATCCGGACCGCGGAGTCCATGATCATGCAGAGGGTGTCAGCCAGTTCAGAGAGGTGATGAGCCCCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG