1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acatagatttaaaaaatggtaataatgcttaacctgcatgtttatgaatactgttgttatcttgcagctgctaatccagtattgattttgtgtggtacagGCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCTGGTGTTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATA
species | Zea mays |
transcript | GRMZM2G007647_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCTCACTGGGGTGTTCTGGATGATGATGAT GCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCTEST: gi|89247463|gb|DY619249.1|DY619249
genomic: TGCTCACTGGGGTGTTCTGGATGATGATGATgtaagtatag ... tgtggtacagGCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCT
EST: CAGCTAACCAAGTACTTGATGCTCACTGGGGTGTTCTGGATGATGATGAT GCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCTEST: gi|67022242|gb|CO450991.1|CO450991
genomic: CAGCTAACCAAGTACTTGATGCTCACTGGGGTGTTCTGGATGATGATGATgtaagtatag ... tgtggtacagGCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCT
EST: CAGCTAACCAAGTACTTGATGCTCACTGGGGTGTTCTGGATGATGATGAT GCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCT
genomic: CAGCTAACCAAGTACTTGATGCTCACTGGGGTGTTCTGGATGATGATGATgtaagtatag ... tgtggtacagGCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCT
gaatactgttgttatcttgcagctgctaatccagtattgattttgtgtggtacagGCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCTGGTGTTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATA
tattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatagatttaaaaaatggtaataatgcttaacctgcatgtttatgaatactgttgttatcttgcagctgctaatccagtattgattttgtgtggtacagGCAACTGGACTTTGCTCGCATACCCTCTCCATCCTTGTGAATGATTGTCCTGGTGTTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATA
- - - - - aaaaaat
- - - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - -actgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcta