1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attccagtacaagattcttcatgctggcatgcttaatctactctaaaattgatctgtagtaacagatccaatatcttttctgtttcttgttattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGTTAGTTTAATACTAGAAGCTTGCGACAGGATTGAGATGTTCTGCCGAAG
species | Zea mays |
transcript | GRMZM2G006480_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGEST: gi|67020982|gb|CO449731.1|CO449731
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
EST: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGEST: gi|211097014|gb|FL478914.1|FL478914
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
EST: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGEST: gi|86473866|gb|DY240236.1|DY240236
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
EST: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGEST: gi|76289527|gb|DV029095.1|DV029095
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
EST: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGEST: gi|78089839|gb|DV518213.1|DV518213
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
EST: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGEST: gi|76911586|gb|DV164332.1|DV164332
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
EST: GGACTTTGTTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTTTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTTGGAGCCCCTGEST: gi|8102634|gb|AW927434.1|AW927434
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
EST: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTG GTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
genomic: GGACTTTGCTCGTGAGTTGATCAAAGAAGAATGTGTCCTGGTTCTACCTGgtacagctca ... tattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTG
aaattgatctgtagtaacagatccaatatcttttctgtttcttgttattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGTTAGTTTAATACTAGAAGCTTGCGACAGGATTGAGATGTTCTGCCGAAG
tagtaac putative branch site (score: 1)
tcttttctgtttcttg putative PPT
tttcttgttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccagtacaagattcttcatgctggcatgcttaatctactctaaaattgatctgtagtaacagatccaatatcttttctgtttcttgttattttacagGTTCTGTCATTGGGTTGAAGAACTGGGTTAGGATATTTTTCGGAGCACCTGTTAGTTTAATACTAGAAGCTTGCGACAGGATTGAGATGTTCTGCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG