1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaacgaacgggccctaagtgattttgcccaacattaatattaatgccaatgaagcttgctttatcctaacactatatatatatatattcctatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAGATGATGTTTGAAAAGCAGAGTCAATCGAGCACGGAGAAAGTCCAGGATC
species | Zea mays |
transcript | GRMZM2G006477_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAG ATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAGEST: gi|211437679|gb|FL100403.1|FL100403
genomic: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAGgtactaattc ... tatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAG
EST: CACTGCGCCTTCAGATGGAAATCCAGAAACGGCTTCATGAACAGCTTGAG ATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAGEST: gi|6056536|gb|AW090926.1|AW090926
genomic: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAGgtactaattc ... tatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAG
EST: CGCTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAG ATTCAGAGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAGEST: gi|4628229|gb|AI619103.1|AI619103
genomic: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAGgtactaattc ... tatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAG
EST: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAG ATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAGEST: gi|89251548|gb|DY623334.1|DY623334
genomic: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAGgtactaattc ... tatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAG
EST: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAG ATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAG
genomic: CACTGCGCCTTCAGATGGAAGTCCAGAAACGGCTTCATGAACAGCTTGAGgtactaattc ... tatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAG
ccaatgaagcttgctttatcctaacactatatatatatatattcctatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAGATGATGTTTGAAAAGCAGAGTCAATCGAGCACGGAGAAAGTCCAGGATC
tcctaac putative branch site (score: 1)
tattcct putative PPT
taacactatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacgaacgggccctaagtgattttgcccaacattaatattaatgccaatgaagcttgctttatcctaacactatatatatatatattcctatattgcagATTCAGCGAAAATTGCAGTTGCGGATTGAAGAGCAAGGAAAGTATCTGCAGATGATGTTTGAAAAGCAGAGTCAATCGAGCACGGAGAAAGTCCAGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
aaacgaa
- - - - - - - - - - - - - cccaaca
- - - - - - - - - - - - - - - - - - - - -aatgcca
- - - - - - - - - - - - - - - - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacta