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gttggttggtctatataagtttttccctttgcaacgtgctccctttttttgtagctatccattgtcaccataactgaattctcatcataactgaaagaaggtacttagttttttatcctgaaatcctaacaacacctgacaatccaatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGTCCGATCAGATATCTACTCAAGCTAGGAGGGACAGTATCATCAGTGGAC
species | Zea mays |
transcript | GRMZM2G005849_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGEST: gi|211509468|gb|FK960933.1|FK960933
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGEST: gi|116819317|gb|EC862427.1|EC862427
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACGAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGEST: gi|211507116|gb|FK960930.1|FK960930
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGEST: gi|47962136|gb|CN844845.1|CN844845
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGNEST: gi|211507117|gb|FK960931.1|FK960931
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGEST: gi|211509469|gb|FK960934.1|FK960934
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGEST: gi|211507106|gb|FK960920.1|FK960920
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGEST: gi|463302|gb|T18269.1|T18269
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
EST: GTGGTGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAG GCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
genomic: GTGGGGTTCATATCAATGCTGGTTGTGAGATTGGTGTTGCCAGTACAAAGgttggttggt ... aatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGG
gtacttagttttttatcctgaaatcctaacaacacctgacaatccaatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGTCCGATCAGATATCTACTCAAGCTAGGAGGGACAGTATCATCAGTGGAC
tagttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttggtctatataagtttttccctttgcaacgtgctccctttttttgtagctatccattgtcaccataactgaattctcatcataactgaaagaaggtacttagttttttatcctgaaatcctaacaacacctgacaatccaatcttgcagGCTTATACAAGTCAAATAGTAGCCATGGCGATGATGGCGTTGGCTATTGGGTCCGATCAGATATCTACTCAAGCTAGGAGGGACAGTATCATCAGTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA