Sequence
atgc intronic sequence ATGC exonic sequencegtgcgttggaaaggcctctctactctacttttccgtggcgccgattatgtccgtgaacattctgtcatccacgagtgaaatgattctctccgaacgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAGTAAGCACTAACGTCCCTCTTTATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003424_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 7
gtgcgttggaaaggcctctctactctacttttccgtggcgccgattatgtccgtgaacattctgtcatccacgagtgaaatgattctctccgaacgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGA-TACCCCAGCCTAATCATAGTAAGCACTAACGTCCCTCTTTATT
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-------------------gtatggca-tgtactgtgattatattgatggatccga-tatcttgtgatcgatgcttgaaatgatttggt--gaacgcaataagCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87156061|gb|DY400850.1|DY400850EST: CCTGCGCTGGAAATCCCTTCGCCCAGCTCCTACTTCTTCCCCATGCGCAG GCTGTCCTCCGAT
genomic: CCTGCGCTGGAAATCCCTTCGCCCAGCTCCTACTTCTTCCCCATGCGCAGgtgcgttgga ... caatgagcagGCTGTCCTCCGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtgaacattctgtcatccacgagtgaaatgattctctccgaacgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAGTAAGCACTAACGTCCCTCTTTATT
aaatgatt TA-rich tract