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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttggaaaggcctctctactctacttttccgtggcgccgattatgtccgtgaacattctgtcatccacgagtgaaatgattctctccgaacgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAGTAAGCACTAACGTCCCTCTTTATT

Basic information

species Zea mays
transcript GRMZM2G003424_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003424_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 7
gtgcgttggaaaggcctctctactctacttttccgtggcgccgattatgtccgtgaacattctgtcatccacgagtgaaatgattctctccgaacgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGA-TACCCCAGCCTAATCATAGTAAGCACTAACGTCCCTCTTTATT
                    ||    | | | | |||       | |||     ||  ||  ||| ||| | |  ||||||||||   |  ||||||||| ||||||||| |||| ||||||||||| || ||||||||||||||            |||||| | ||||||||||||||||                         
-------------------gtatggca-tgtactgtgattatattgatggatccga-tatcttgtgatcgatgcttgaaatgatttggt--gaacgcaataagCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156061|gb|DY400850.1|DY400850
EST:     CCTGCGCTGGAAATCCCTTCGCCCAGCTCCTACTTCTTCCCCATGCGCAG                         GCTGTCCTCCGAT
genomic: CCTGCGCTGGAAATCCCTTCGCCCAGCTCCTACTTCTTCCCCATGCGCAGgtgcgttgga ... caatgagcagGCTGTCCTCCGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgaacattctgtcatccacgagtgaaatgattctctccgaacgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAGTAAGCACTAACGTCCCTCTTTATT
                          aaatgatt  TA-rich tract