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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataatttgaaatttctattagaggagtcttttggtttccatttctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG

Basic information

species Zea mays
transcript GRMZM2G003385_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 3'ss of exon 7
gtaaataatt-tgaaatttcta-ttagaggagtcttt---tggtttccatttctcttagca----taatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
|||  ||||| |    |   |  | ||| || | |||   |   |   || |  ||||  |    || |  | ||  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||| ||||| ||||||
gtaggtaattgtttcgtcggtgctcagatgactgtttgcctatataaaatgttgcttaaaatttttattactcttttagGTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG

upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G40690.1 (Glycine max), 3'ss of exon 6
----gtaaataattt---gaaatttctattagaggagtct--tttggtttccattt---ctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
     |||||  ||    |  ||||     |  |   |||  ||    ||  ||||   ||||||   |     |  || ||||||| |||||||| ||||||||||||||||| || || || || || ||||| || || ||||| |||||||||||||||||||  ||||| |||
gtaactaaatggttcaccgtgattttgggaatcgtgatctaattaaacttttatttactctcttattttgtctgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCTTGCAAGGCAGCTGATGCTGCTGTGAAG

upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT3G08590.2 (Arabidopsis thaliana), 3'ss of exon 5
-----gtaaataatttga--aatttctattagaggagt----cttttggtttccatttctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
     ||  ||  | | |  |  || ||| |    | |    |  |||| |||    | |  |  ||  |||   || ||||| ||||| |||||||||||||| || ||||| || || ||||| |||||||| || || |||||||| ||  | || ||||||   ||||| | |
gtaaggtgtattctcttatcacattgtatcaacccattaaaacaattggcttctgagtttggtgcca--atggattttcagGTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGG

upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
------------------gtaaataatttgaaatttc-tattagaggagtcttttggtttccatttctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
                   ||    |||||| |   | |  |  | |           ||  |||| | |   || |   |||||  |||| ||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||| |||
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgttt---cacatctttgtt-tagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG

upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ14459 (Selaginella moellendorffii), 3'ss of exon 6
gtaaataatttgaaatttctattagaggagtcttttggtttccatt-tctcttagcataatgttgttac--agGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
                          | |        |||| |||  || | |   ||  | | | | |  || || | || ||  | || |||||||||||||||||||||||||| ||| |  |||| ||| |||| |||||  | || || ||| | |||||||||
--------------------------gtaactccaaagtttgcatcgtcccatcttattctttcgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAG

upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ26058 (Selaginella moellendorffii), 3'ss of exon 6
gtaaataatttgaaatttctattagaggagtcttttggtttccatttctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
     ||| |  ||| ||  | | | |   || | |  ||||  ||  |                   || || | || ||  | || |||||||||||||||||||||||||| ||| |  |||| ||| |||| |||||  | || || ||| | |||||||||
----gtaactccaaagtttgaatcgtgccatcgtattctttctcttctt-------------------agATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6012563|gb|AW062000.1|AW062000
EST:     AAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCNCACTGGGGATATT
genomic: AAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|24765765|gb|CA400924.1|CA400924
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|60345366|gb|DN212339.1|DN212339
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|67024990|gb|CO453739.1|CO453739
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|67018390|gb|CO447139.1|CO447139
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|31362420|gb|CD446777.1|CD446777
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|61119246|gb|DN560207.1|DN560207
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|67015206|gb|CO443955.1|CO443955
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|67014111|gb|CO442860.1|CO442860
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|213192767|gb|FM182154.1|FM182154
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|24769554|gb|CA404683.1|CA404683
EST:     AAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|60358060|gb|DN225033.1|DN225033
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|31359610|gb|CD443967.1|CD443967
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|37396131|gb|CF635353.1|CF635353
EST:     GGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: GGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|78085787|gb|DV514180.1|DV514180
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|211242237|gb|FL127857.1|FL127857
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|31361690|gb|CD446047.1|CD446047
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|120481376|gb|EH211274.1|EH211274
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|60356435|gb|DN223408.1|DN223408
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|211242235|gb|FL127855.1|FL127855
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|37395541|gb|CF635051.1|CF635051
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|211242234|gb|FL127854.1|FL127854
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCRCACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|31354846|gb|CD439203.1|CD439203
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|40336839|gb|CK370909.1|CK370909
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|116820113|gb|EC863305.1|EC863305
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATA
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|60394802|gb|DN227672.1|DN227672
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|31362729|gb|CD447086.1|CD447086
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|24767470|gb|CA402612.1|CA402612
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|211240012|gb|FL127852.1|FL127852
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
EST: gi|31355731|gb|CD440088.1|CD440088
EST:     AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT
genomic: AAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 271

TAGTGACAGTGGTATTACATTCAATGTTGCACCCAAGATGAAGGCGCTTCAAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 546

TAGTGACAGTGGTATTACATTCAATGTTGCACCCAAGATGAAGGCGCTTCAAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 313

TAGTGACAGTGGTATTACATTCAATGTTGCACCCAAGATGAAGGCGCTTCAAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 569

TAGTGACAGTGGTATTACATTCAATGTTGCACCCAAGATGAAGGCGCTTCAAATTGCTGAGAAAGCTAGGGACGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctattagaggagtcttttggtttccatttctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
                                        ataatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaataatttgaaatttctattagaggagtcttttggtttccatttctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT