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...tttcagatttagtgagcttcatgacaacaatcaatatgtgtgtatatgatccagctgttcaatgaagatttctgattttctaagtctgttggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGATGGACTTTTTGACAATATCTTTGACCAAGAGATTGTTTCCATAATTTCTG
species | Zea mays |
transcript | GRMZM2G003096_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|89249663|gb|DY621449.1|DY621449
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|211439719|gb|FL188857.1|FL188857
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTCATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|16378003|gb|BI992233.1|BI992233
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|60352390|gb|DN219363.1|DN219363
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|211439722|gb|FL188860.1|FL188860
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTCATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|211322726|gb|FL462750.1|FL462750
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTCATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|211439720|gb|FL188858.1|FL188858
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTCATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|211537751|gb|FL446842.1|FL446842
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTCATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|211439718|gb|FL188856.1|FL188856
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTCATGGAGGGTGATATAATTGTGAGTGGTTCAGATEST: gi|76281783|gb|DV021351.1|DV021351
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
EST: CATCCCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG GTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
genomic: CATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTGgtatgtacct ... ggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGAT
atgatccagctgttcaatgaagatttctgattttctaagtctgttggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGATGGACTTTTTGACAATATCTTTGACCAAGAGATTGTTTCCATAATTTCTG
ttctgat putative branch site (score: 3)
attttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcagatttagtgagcttcatgacaacaatcaatatgtgtgtatatgatccagctgttcaatgaagatttctgattttctaagtctgttggtctgtcagGTTTGCAGTGTAAATCTTATGGAGGGTGATATAATTGTGAGTGGTTCAGATGGACTTTTTGACAATATCTTTGACCAAGAGATTGTTTCCATAATTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - cttcatg
- - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - ccagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga