1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caggatgtgtagaagtggttttatacactagccataaatcacccattgctatactaggatgcctgttggctggattttgatattctgtctgtttctgtagGTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG
species | Zea mays |
transcript | GRMZM2G003076_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGTATCACTATTTGCTGCCCTTGGATTTGTTCTGTATGGAGGAAG GTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAEST: gi|71429006|gb|DR810056.1|DR810056
genomic: GTGTATCACTATTTGCTGCCCTTGGATTTGTTCTGTATGGAGGAAGgtaacatttt ... gtttctgtagGTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAA
EST: GTGTATCACTATTTGCTGCCCTTGGATTTGTTCTGTATGGAGGAAG GTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAEST: gi|71429005|gb|DR810055.1|DR810055
genomic: GTGTATCACTATTTGCTGCCCTTGGATTTGTTCTGTATGGAGGAAGgtaacatttt ... gtttctgtagGTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAA
EST: GTGTATCACTATTTGCTGCCCTTGGATTTGTTCTGTATGGAGGAAG GTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAA
genomic: GTGTATCACTATTTGCTGCCCTTGGATTTGTTCTGTATGGAGGAAGgtaacatttt ... gtttctgtagGTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAA
ttgctatactaggatgcctgttggctggattttgatattctgtctgtttctgtagGTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG
ttttgat putative branch site (score: 271)
ttctgtctgtttct CT-rich tract
attttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggatgtgtagaagtggttttatacactagccataaatcacccattgctatactaggatgcctgttggctggattttgatattctgtctgtttctgtagGTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- ggatgtg
- - - - - - - - - - - - -cactagc
- - - - - - - - - - - - - - - - - - - - - ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctggat