1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgatggtttcacatccacatcctttccatccttgcccattgtgctaaagaaagtttacaacttcgagaaaaatctggtcggttatgttatcttgattgagctttcttattttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTTCCATGCCTCCACCGCCTGCATATGAAGAAGTCAATGGTATATTCATGA
species | Zea mays |
transcript | GRMZM2G002859_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|149070323|gb|EE158722.2|EE158722
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATTTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|33091909|gb|CF051903.1|CF051903
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAATTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|148986436|gb|EE030178.2|EE030178
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATTTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|40336986|gb|CK371056.1|CK371056
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|40335185|gb|CK369255.1|CK369255
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|60356623|gb|DN223596.1|DN223596
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|37380473|gb|CF627052.1|CF627052
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTEST: gi|21987351|gb|BQ778879.1|BQ778879
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCG
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCG
agaaaaatctggtcggttatgttatcttgattgagctttcttattttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTTCCATGCCTCCACCGCCTGCATATGAAGAAGTCAATGGTATATTCATGA
tcttgat putative branch site (score: 4)
ctttcttatttttttt putative PPT
tttcttattttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgatggtttcacatccacatcctttccatccttgcccattgtgctaaagaaagtttacaacttcgagaaaaatctggtcggttatgttatcttgattgagctttcttattttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGTTCCATGCCTCCACCGCCTGCATATGAAGAAGTCAATGGTATATTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT