1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacttgtttcgtcacattgcacaagttcgtagctgccaggcgctagctcttgatttttacccatataataatctacatatttgttgtcatttttcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTGGTGACTACATAGTGGTCCGAAAG
species | Zea mays |
transcript | GRMZM2G002859_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|166412609|gb|EG270091.1|EG270091
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: TATTTC-TGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|149070323|gb|EE158722.2|EE158722
genomic: TATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|33091909|gb|CF051903.1|CF051903
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGGCTGTGGAGTATTTCTTGGCTGAG ACAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|148986436|gb|EE030178.2|EE030178
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTTTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|40336986|gb|CK371056.1|CK371056
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|40335185|gb|CK369255.1|CK369255
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|101396723|gb|EB820287.1|EB820287
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: AATACAGTTGCAGAATTGGTGGAGACTGTGGGAGTTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|60356623|gb|DN223596.1|DN223596
genomic: AATACAGTTGCAGAATTGGTCGAGACTGT-GGAG-TATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|211534621|gb|FL443302.1|FL443302
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|37385184|gb|CF629716.1|CF629716
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|37380473|gb|CF627052.1|CF627052
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTEST: gi|38687511|gb|CK144542.1|CK144542
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
EST: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAG GCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
genomic: GAAATACAGTTGCAGAATTGGTCGAGACTGTGGAGTATTTCTTGGCTGAGgtaacttgtt ... tcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACT
cttgatttttacccatataataatctacatatttgttgtcatttttcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTGGTGACTACATAGTGGTCCGAAAG
tcttgat putative branch site (score: 50)
ttgtcatttttcttc putative PPT
atataataatctacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttgtttcgtcacattgcacaagttcgtagctgccaggcgctagctcttgatttttacccatataataatctacatatttgttgtcatttttcttcggtagGCAATCCAGTCATACCAAGCCGAAAGCGATACCGAGCTCAACCTTTCAACTGGTGACTACATAGTGGTCCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA