1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattattctgaaacactggatttaaactctacattttagactgttttgggactatttattgtcaagtttctggttttttggtgatggtcatttgggactctacatttgaacatctgttgcatttggggaaggtgttatgaatttactttgacagtgctgaacatgacctggtgttaattcgctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATGACTACTATGAAAAGGAAACCAGGGGCAGAGATAGAGGTGATCTTGGAAG
species | Zea mays |
transcript | AC233865.1_FGT006 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTG GTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATGEST: gi|211427307|gb|FL442311.1|FL442311
genomic: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTGgtattattct ... gctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATG
EST: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTG GTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATGEST: gi|4776640|gb|AI665643.1|AI665643
genomic: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTGgtattattct ... gctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATG
EST: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTG GTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATGEST: gi|166508072|gb|EG117422.1|EG117422
genomic: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTGgtattattct ... gctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATG
EST: GGGAAGTTGAGCATCGTG GTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATGEST: gi|148971574|gb|EE022288.2|EE022288
genomic: GGGAAGTTGAGCATCGTGgtattattct ... gctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATG
EST: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTG GTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATG
genomic: ACAGGCACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCATCGTGgtattattct ... gctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATG
tatgaatttactttgacagtgctgaacatgacctggtgttaattcgctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATGACTACTATGAAAAGGAAACCAGGGGCAGAGATAGAGGTGATCTTGGAAG
tgttaat putative branch site (score: 26)
atttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattctgaaacactggatttaaactctacattttagactgttttgggactatttattgtcaagtttctggttttttggtgatggtcatttgggactctacatttgaacatctgttgcatttggggaaggtgttatgaatttactttgacagtgctgaacatgacctggtgttaattcgctgctgtagGTCCTAGTGAAAGGGAAGGCAGGGAGAGGAGCAGGGATCGTGTTAGGGATGACTACTATGAAAAGGAAACCAGGGGCAGAGATAGAGGTGATCTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG