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gtaagaatgccactattcgctacatctgcaataatggccatttgaaggcccccaaggttttggagttcgaactaatgtcgaaaattatgtgcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTCATGCACTCATTTGGAGTTCGACATTGCTGCAACTGGTCTCAC
species | Zea mays |
transcript | AC217947.4_FGT002 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGCCTTGCAAATAGCCATGCAAGTCCATGATGCCCAGACATCCTTGCCA GGCTTAATGTGGTCGTGCGGCAGGAACEST: gi|148961292|gb|EE012017.2|EE012017
genomic: CAGCCTTGCAAATGGCCATGCA-GTCCATGATGCCCAG-CATCCTTGCCAgtaagaatgc ... gcctatttagGGCT-AATGTGGTCGTGCGGCAGGAAC
EST: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCA GGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTCEST: gi|38502682|gb|CF972542.1|CF972542
genomic: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCAgtaagaatgc ... gcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTC
EST: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCA GGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTCEST: gi|74235808|gb|DT643722.1|DT643722
genomic: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCAgtaagaatgc ... gcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTC
EST: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCA GGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTCEST: gi|13149591|gb|BG319913.1|BG319913
genomic: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCAgtaagaatgc ... gcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTC
EST: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCA GGCTAATGTGGCCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTCEST: gi|74235807|gb|DT643721.1|DT643721
genomic: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCAgtaagaatgc ... gcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTC
EST: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCA GGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTC
genomic: TTCAGCCTTGCAAATGGCCATGCAGTCCATGATGCCCAGCATCCTTGCCAgtaagaatgc ... gcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTC
aggcccccaaggttttggagttcgaactaatgtcgaaaattatgtgcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTCATGCACTCATTTGGAGTTCGACATTGCTGCAACTGGTCTCAC
aactaat putative branch site (score: 214)
cctattt putative PPT
aaaattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatgccactattcgctacatctgcaataatggccatttgaaggcccccaaggttttggagttcgaactaatgtcgaaaattatgtgcctatttagGGCTAATGTGGTCGTGCGGCAGGAACTCCACACCCCTGCTTCTGATCGTTCATGCACTCATTTGGAGTTCGACATTGCTGCAACTGGTCTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC