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gtaagatcttgacagcaatatgtgataaacttcgatatcttattgaactcagttaccagtattaaccgtgccaaatggtcatgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATTGTGAAAGACCGGCTACCAAGTTTCACACCTGAACAGGCCAAGCTAGTC
species | Zea mays |
transcript | AC217401.3_FGT002 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|67013218|gb|CO441967.1|CO441967
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAACGATAATGCAAGACATEST: gi|78075435|gb|DV503869.1|DV503869
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|149081710|gb|EE170863.2|EE170863
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAGAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|149081712|gb|EE170865.2|EE170865
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAEST: gi|60351674|gb|DN218647.1|DN218647
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAA
EST: AAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|149013746|gb|EE043205.2|EE043205
genomic: AAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|60340042|gb|DN207015.1|DN207015
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGAT-AAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|60394083|gb|DN226953.1|DN226953
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGA-CAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|149014535|gb|EE044169.2|EE044169
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCANAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|40336432|gb|CK370502.1|CK370502
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|32834810|gb|CD974488.1|CD974488
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATEST: gi|20507721|gb|BQ279747.1|BQ279747
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
EST: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTG GTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
genomic: ACTGAAGATCAAAAAGCAGCGCAAAGGGCCAGGGACTTCCATATTGGTTGgtaagatctt ... catgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACAT
atatcttattgaactcagttaccagtattaaccgtgccaaatggtcatgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATTGTGAAAGACCGGCTACCAAGTTTCACACCTGAACAGGCCAAGCTAGTC
tattaac putative branch site (score: 182)
ttattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcttgacagcaatatgtgataaacttcgatatcttattgaactcagttaccagtattaaccgtgccaaatggtcatgattcagGTTTCTTGATCCATTAATAAATGGGCAATATCCAAAGATAATGCAAGACATTGTGAAAGACCGGCTACCAAGTTTCACACCTGAACAGGCCAAGCTAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT