1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaataacagcttctagttctgtggtcactagcatgccttttaagccatttcttgcagtatattgttcctggaggctcgaatgacaatgtctgttctgcactactgtggtcactgaaacttttcatttttttattgttcgcagGTACTTGCTTTCAATGGCCAGCCTGTTAAAAATTTAAAGAACTTGGCGACCATGGTGGAAAATTGCAAGGATGAATTTTTGAAGTTTGATCTGGAGTATG
species | Zea mays |
transcript | AC212112.4_FGT002 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGTTTCAGATATCAATATAGGTTATGAAGAAATAGTCAATACTCAG GTACTTGCTTTCAATGGCCAGCCTGTAAAAAATTTAAAGAACTTGGCGACCEST: gi|89762755|gb|DY690219.1|DY690219
genomic: TGCTTGTATCAGATATCAATATAGGTTATGAAGAAATAGTCAATACTCAGgtaataacag ... ttgttcgcagGTACTTGCTTTCAATGGCCAGCCTGTTAAAAATTTAAAGAACTTGGCGACC
EST: TGCTTGTATCAGATATCAATATAGGTTATGAAGAAATAGTCAATACTCAG GTACTTGCTTTCAATGGCCAGCCTGTTAAAAATTTAAAGAACTTGGCGACC
genomic: TGCTTGTATCAGATATCAATATAGGTTATGAAGAAATAGTCAATACTCAGgtaataacag ... ttgttcgcagGTACTTGCTTTCAATGGCCAGCCTGTTAAAAATTTAAAGAACTTGGCGACC
gtctgttctgcactactgtggtcactgaaacttttcatttttttattgttcgcagGTACTTGCTTTCAATGGCCAGCCTGTTAAAAATTTAAAGAACTTGGCGACCATGGTGGAAAATTGCAAGGATGAATTTTTGAAGTTTGATCTGGAGTATG
cttttcatttttttat CT-rich tract
aaacttttcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataacagcttctagttctgtggtcactagcatgccttttaagccatttcttgcagtatattgttcctggaggctcgaatgacaatgtctgttctgcactactgtggtcactgaaacttttcatttttttattgttcgcagGTACTTGCTTTCAATGGCCAGCCTGTTAAAAATTTAAAGAACTTGGCGACCATGGTGGAAAATTGCAAGGATGAATTTTTGAAGTTTGATCTGGAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG