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...aaatagcagtgctattagcatgcaaagttccattcccgagtgcataaaaagtacgtggtcatgactcttgtctctacatttttttttgttccttgagcagAATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAG
species | Zea mays |
transcript | AC190609.3_FGT004 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGCAAATGGG AATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATEST: gi|37379778|gb|CF626648.1|CF626648
genomic: TCGCAAATGGGgtaacatgac ... ccttgagcagAATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGAT
EST: ATGATCTTGCACTACATGTGTATCCCCATGAGTACTTTTTCGCAAATGGG AATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATEST: gi|211431081|gb|FL481796.1|FL481796
genomic: ATGATCTTGCACTACATGTGTATCCCCATGAGTACTTTTTCGCAAATGGGgtaacatgac ... ccttgagcagAATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGAT
EST: ATGATCTTGCACTACATGTGTATCCCCATGAGTACTTTTTCGCAAATGGG AATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATEST: gi|86469808|gb|DY236178.1|DY236178
genomic: ATGATCTTGCACTACATGTGTATCCCCATGAGTACTTTTTCGCAAATGGGgtaacatgac ... ccttgagcagAATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGAT
EST: ATGATCTTGCACTACATGTGTATCCCCATGAGTACCTTTTCGCAAATGGG AATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGAT
genomic: ATGATCTTGCACTACATGTGTATCCCCATGAGTACTTTTTCGCAAATGGGgtaacatgac ... ccttgagcagAATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGAT
aaaaagtacgtggtcatgactcttgtctctacatttttttttgttccttgagcagAATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAG
ctcttgtctctacatt CT-rich tract
tacatttttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatagcagtgctattagcatgcaaagttccattcccgagtgcataaaaagtacgtggtcatgactcttgtctctacatttttttttgttccttgagcagAATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -gcagtgc
- - - - - - - - agcatgc
- - - - - - - - - - - - - - -ccattcc
- - - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - aaaagtac