Sequence
atgc intronic sequence ATGC exonic sequence...tgcaatgggccttgaataggcagacaataatacagctagggttttcacttttataagtaagtggttttaattaatcaaaacttttgtcaaaatggcttagATTATTCTTTATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AC189879.3_FGT003 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 8
tgcaatgggccttgaataggcagacaataa-tacagctagggttttcacttttataagtaagtggttttaattaatcaaaacttttgtcaaaatggctta-gATTAT---TCTTTATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG------------------
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-----tgttcaatagctacccacccaataagtgctactagggtttct------------------cttcacttgatcagcactcttgttataatggttcaagactaaaaaaatttctttccagACAGTTCAACAAAATGGATATGAGCAAGACCCTTATGCAAAAGAATTTGGAATCAACATTAGTGAGAAGCTAACCTCAGTTGAAGCTCGGGTCCTTCCTG
upper sequence: AC189879.3_FGT003 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 8
tgcaatgggccttgaataggcagacaataatacagctagggttttcacttttataagtaagtggttttaattaatcaaaacttttgtcaaaatggcttagATTATTCTTTATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG------------------
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---tttatatcttca-caaacaaataata-tatatccatgatattctagaagctaaacaa-taaagttgtgtcatcaaa-------ttaacat---ttcaattttgcttcatg--cagACCATTCAGCACAATGCTTATGGTCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATTAGTGAAAAGCTAGCTTCTGTAGAAGCGCGAATTCTCCCTG
upper sequence: AC189879.3_FGT003 (Zea mays), 3'ss of exon 7
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 8
tgcaatgggccttgaataggcagacaataatacagctagggttttcacttttataagtaagtggttttaattaatcaaaacttttgtcaaaatggcttagATTATTCTTTATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG------------------
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--tgtttgatcttggattgaca-----tgattctgtgatgtttttgggtcttg-----gtttagtttgagctaataacatcttatgctt------tttaaacttcaaaaaataaccagACGGTTCAACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTG
upper sequence: AC189879.3_FGT003 (Zea mays), 3'ss of exon 7
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 8
tgcaatgggccttgaataggcagacaataatacagctagggttttcacttttataagtaagtggtttta-attaatcaaaacttttgtcaaaatggcttagATTATTCTT-TATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG------------------
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----------------ttggagagtatttatac--tcatgactgcaaaaagaatgtgtttgatgccttacaagaataatgacttccatccttctaaa--ggttcacgattatattttcagACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacttttataagtaagtggttttaattaatcaaaacttttgtcaaaatggcttagATTATTCTTTATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG
aattaat putative branch site (score: 3)
ttttaattaatcaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcaatgggccttgaataggcagacaataatacagctagggttttcacttttataagtaagtggttttaattaatcaaaacttttgtcaaaatggcttagATTATTCTTTATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
tgcaatg
- - - - - cttgaat
- - - - - - - - - -gcagaca
- - - - - - - - - - - - - - - tacagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa