1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttggctggtatgaaaataaaccattagctatatggcatctattggatgttggtagagaaagatttatctgatcttgacaataaacatttacccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG
species | Zea mays |
transcript | GRMZM5G896731_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAAT-G -------GGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTEST: gi|71438321|gb|DR819371.1|DR819371
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... acccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG -------G-TTGAAGAGTGTTATATACCACTTTCGTAGGAATCGAGAATTTEST: gi|89250808|gb|DY622594.1|DY622594
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... acccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACACTGG -------G-TTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTEST: gi|78109135|gb|DV527552.1|DV527552
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... acccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAAT-G -------GGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTEST: gi|60358732|gb|DN225705.1|DN225705
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... acccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAAT-G -------GGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTEST: gi|91050003|gb|EB160421.1|EB160421
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... acccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG TCTATCANGTTGAAGAGTGGTATATACCACTTTCG
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... acccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCG
gatgttggtagagaaagatttatctgatcttgacaataaacatttacccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG
tcttgac putative branch site (score: 3)
tttaccctttt putative PPT
acaataaacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggctggtatgaaaataaaccattagctatatggcatctattggatgttggtagagaaagatttatctgatcttgacaataaacatttacccttttagTCTATCAGGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG
- -ggctggt
- - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaa