1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgagtagattcttgtgaaatgtaatctgctttattttgcataaataagtcgtatgatcgttgacacttacaaatacatttggctgtcaataatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACCAGAAAAAGAGGGGGACATGATTCCACAGTCCGTGCAGTGTCGTGGTTTA
species | Zea mays |
transcript | GRMZM5G891739_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTG GTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAACACCEST: gi|4804563|gb|AI665586.2|AI665586
genomic: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTGgtaatgacaa ... taatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACC
EST: CCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTG GTATCATTGGAATTCAGTCATCAGTTTGACAAATANCGGCTTAGTACCACCEST: gi|10697633|gb|BE997357.1|BE997357
genomic: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTGgtaatgacaa ... taatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACC
EST: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTG GTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACCEST: gi|67039156|gb|CO465411.1|CO465411
genomic: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTGgtaatgacaa ... taatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACC
EST: CCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTG GTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAACACCEST: gi|78027318|gb|DV495705.1|DV495705
genomic: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTGgtaatgacaa ... taatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACC
EST: CCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTG GTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAACACCEST: gi|47962526|gb|CN845235.1|CN845235
genomic: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTGgtaatgacaa ... taatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACC
EST: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTG GTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACCEST: gi|45568100|gb|CK985902.1|CK985902
genomic: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTGgtaatgacaa ... taatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACC
EST: CCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTG GTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAACACC
genomic: CCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATGTGgtaatgacaa ... taatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACC
taagtcgtatgatcgttgacacttacaaatacatttggctgtcaataatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACCAGAAAAAGAGGGGGACATGATTCCACAGTCCGTGCAGTGTCGTGGTTTA
cacttac putative branch site (score: 44)
ttacaaatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagtagattcttgtgaaatgtaatctgctttattttgcataaataagtcgtatgatcgttgacacttacaaatacatttggctgtcaataatttgcagGTATCATTGGAATTCAGTCATCAGTTTGACAAATAACGGCTTAGTAGCACCAGAAAAAGAGGGGGACATGATTCCACAGTCCGTGCAGTGTCGTGGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - attcttg
- - - - - - - -tgaaatg
- - - - - - - - - - - - - ctgcttt
- - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtca