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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcaatatctctcatgtgcatatccaagaattttcatcttatgttttttttgcctaattataagaatttattgattcaacaccgatagacttcatgaattcaacttattttgatagttatcgtgttaagcaacctaacttgcatcttagtgtaactgatctttatgatagccacttgaatttgaacgattttcagGTGGTCTACTAATTGGCAGGACAATTGCAGTATTCTTGACACTGACACTAGCTACATCCCTGGCTGCAAGGGAAGGGCCTGTTCCAATGGCGGGCTATGA

Basic information

species Zea mays
transcript GRMZM5G890665_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G890665_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g01580.1 (Oryza sativa), 3'ss of exon 6
gttggtcaatatctctcatgtgcatatccaagaattttcatcttatgttttttttgcctaattataagaatttattgattcaacaccgatagacttcatgaattcaacttattttgatagttatcgtgttaa-gcaacctaacttgcatcttagtgtaactgatctttatgatagccacttgaatttgaacgattttcagGTGGTCTACTAATTGGCAGGACAATTGCAGTATTCTTGACACTGACACTAGCTACATCCCTGGCTGCAAGGGAAGGGCCTGTTCCAATGGCGGGCTATGA
                                                                                               | |  | ||   ||   ||  | |  | || | ||   ||||  || ||    |        ||   | |  | | | |  |||    |  |||    | |  |||||  || |||||||  || || || |||||| || ||||| | ||  |  | |||||||||||||| ||||||||| ||||||||||||| ||||||||
-----------------------------------------------------------------------------------------------ttagtactt--gctctattaaacaagtttcatcttgctgcaatttatctctattaaacaaaaaaaaaaacactttaacatacaccaatacatgat---tctctagGTGCGCTGCTAATTGCAAGAACCATAGCAGTAGTCCTGACATTCACTGTGTCGACATCCCTGGCTGCCAGGGAAGGGTCTGTTCCAATGGCTGGCTATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatcttagtgtaactgatctttatgatagccacttgaatttgaacgattttcagGTGGTCTACTAATTGGCAGGACAATTGCAGTATTCTTGACACTGACACTAGCTACATCCCTGGCTGCAAGGGAAGGGCCTGTTCCAATGGCGGGCTATGA
            aactgat  putative branch site (score: 3)
                                                ttttc  putative PPT
                    tttatgata  TA-rich tract