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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttgaaaattcaagaggattccaatgggtgttttctattttgtcctatgatgtggagctctataaagatttgttcaattttctctccgtttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTCGAACTGGAACTTATATACAAAGTACAGACACAGTGCTATGAGGATGCTA

Basic information

species Zea mays
transcript GRMZM5G877316_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G877316_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 3'ss of exon 6
atttgaaaattcaagaggattccaatgggtgttttctattttgtcctatgatgtggagctctataaag---atttgttcaattttctctccgtttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTCGAACTGGAACTTATATACAAAGTACAGACACAGTGCTATGAGGATGCTA
   || | |||       |   | |  |    |||  || ||      |  | |        ||       |||| ||  || |        |   |   |||||||||||||||||||  ||||||||||| || ||||| |||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||
---tggagattaggattaacctctaaagaccattttgatctttctaggttctctttgttatgatgggtatcatttattatatctaaaaatattccctttacagGTGAAAGCATGGGCTGGCCTTTTGAATGCATTCTGCACAAGTGGCAGGCTTGAACTCGAACTCATATACAAAGTTCAGACACAGTGCTATGAGGATGCTA

upper sequence: GRMZM5G877316_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA09G38530.1 (Glycine max), 3'ss of exon 6
---atttgaaaattcaagaggattccaatgggtgttttctattttgtcctatgatgtggagctctataaagatttgttca-attttctctccgtttgtactca-gGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTCGAACTGGAACTTATATACAAAGTACAGACACAGTGCTATGAGGATGCTA
   |  || | || |||||  |  ||| |  || |||| | ||  ||   ||| | |  | || | |||| | ||||| |      | ||  |||  |  | | ||| ||| | ||||| ||  | |||||| | || ||||| | ||| | ||| || |||||||| || |||||||||||||  || ||||||||||||||||
tgtagctgcatat-caagaaaa--ccagttagtttttttttttgcgtgacatgcttt--atctttgtaaaaagttgttgacgacagcactgtgttcatggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60359653|gb|DN226626.1|DN226626
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|78108788|gb|DV527205.1|DV527205
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|4688431|gb|AI637101.1|AI637101
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|32831368|gb|CD971046.1|CD971046
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60348203|gb|DN215176.1|DN215176
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|91873013|gb|EB402970.1|EB402970
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|91051544|gb|EB161962.1|EB161962
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60352644|gb|DN219617.1|DN219617
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60356466|gb|DN223439.1|DN223439
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60395427|gb|DN228297.1|DN228297
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60398268|gb|DN231084.1|DN231084
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60396749|gb|DN229613.1|DN229613
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60345402|gb|DN212375.1|DN212375
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|116829286|gb|EC866340.1|EC866340
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60397626|gb|DN230442.1|DN230442
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|78544691|gb|DV622189.1|DV622189
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60352735|gb|DN219708.1|DN219708
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|9254986|gb|BE345454.1|BE345454
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60340817|gb|DN207790.1|DN207790
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60401017|gb|DN233824.1|DN233824
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|5525417|gb|AI861310.1|AI861310
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60394003|gb|DN226873.1|DN226873
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60346883|gb|DN213856.1|DN213856
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|76935235|gb|DV174253.1|DV174253
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|22490940|gb|BU050863.1|BU050863
EST:     AGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60350223|gb|DN217196.1|DN217196
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|21809523|gb|BQ667841.1|BQ667841
EST:     AGTGGTCTGGGAAGAGCCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|88752189|gb|DY536330.1|DY536330
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60342918|gb|DN209891.1|DN209891
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60349190|gb|DN216163.1|DN216163
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|32830740|gb|CD970418.1|CD970418
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|61117471|gb|DN558432.1|DN558432
EST:     CTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: CTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|113850730|gb|DW968511.1|DW968511
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAAGCTTTTGAATGCTTTT
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGA-GCTTTTGAATGCTTTT
EST: gi|32803373|gb|CD955609.1|CD955609
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60359300|gb|DN226273.1|DN226273
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|32831049|gb|CD970727.1|CD970727
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|32940069|gb|CF044888.1|CF044888
EST:     GGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|50331628|gb|CO526754.1|CO526754
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|50331627|gb|CO526753.1|CO526753
EST:     GGGAAGAACCAGCAACAGAATTTTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: GGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60347041|gb|DN214014.1|DN214014
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|5525704|gb|AI861597.1|AI861597
EST:     GAATTCTAATGCAGC-CTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: GAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60397486|gb|DN230302.1|DN230302
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|29576782|gb|CB616894.1|CB616894
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|40302771|gb|CK347158.1|CK347158
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGC-TTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60394809|gb|DN227679.1|DN227679
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|61117478|gb|DN558439.1|DN558439
EST:     TAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: TAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|76912268|gb|DV164647.1|DV164647
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
EST: gi|60395035|gb|DN227904.1|DN227904
EST:     AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAG                         GTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC
genomic: AGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgtt ... ttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgatgtggagctctataaagatttgttcaattttctctccgtttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTCGAACTGGAACTTATATACAAAGTACAGACACAGTGCTATGAGGATGCTA
                                 ttttctctccgtttgt  CT-rich tract
                tataaagatttgttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttgaaaattcaagaggattccaatgggtgttttctattttgtcctatgatgtggagctctataaagatttgttcaattttctctccgtttgtactcagGTGAAAGCATGGGCTGAGCTTTTGAATGCTTTTTGCACGAGTGGCAGACTCGAACTGGAACTTATATACAAAGTACAGACACAGTGCTATGAGGATGCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
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