1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgcttaacctttagctgctgcaactcttattgcaaagggctacttcttgctttctttacttgtatatttgtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGAGGTGCTGATCCTGAAAAGTTTTCTAAAGCCATTATCCAGCTTGGCTTT
species | Zea mays |
transcript | GRMZM5G876003_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|78093364|gb|DV521738.1|DV521738
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|78074349|gb|DV502783.1|DV502783
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|71429033|gb|DR810083.1|DR810083
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: CAACTATCCAAGTTATTTAAGAGGAAGCAAATAGGGGTTCTCAA-CCAAG TGGTTGGCTTGTTATTGCTEST: gi|148948105|gb|EC893614.2|EC893614
genomic: CAACTATCCAAGTTATTTA-GAGGAAGCAAATAGGG-TTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCT
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|74240434|gb|DT648348.1|DT648348
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|74245743|gb|DT653657.1|DT653657
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: TCAACTATCCAAGTTATTTAGAGGAAGCAAAATAGGGT-CTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTEST: gi|74235314|gb|DT643228.1|DT643228
genomic: TCAACTATCCAAGTTATTTAGAGGAAGCAAA-TAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCT
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|78093365|gb|DV521739.1|DV521739
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|78080458|gb|DV508870.1|DV508870
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGEST: gi|76923219|gb|DV169381.1|DV169381
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
EST: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAG TGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
genomic: ATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGgtttgcttaa ... gtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGG
tcttattgcaaagggctacttcttgctttctttacttgtatatttgtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGAGGTGCTGATCCTGAAAAGTTTTCTAAAGCCATTATCCAGCTTGGCTTT
tttgttt CT-rich tract
tttacttgtatatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcttaacctttagctgctgcaactcttattgcaaagggctacttcttgctttctttacttgtatatttgtttatgcagTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGAGGTGCTGATCCTGAAAAGTTTTCTAAAGCCATTATCCAGCTTGGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT