1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtcgagatcatacgctggcagtaagcagaacaaccatctgcctgtgtgttcaaaaccgggatgtgagctcagctttgctcccttctcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTTGTGAAGTCAGCATGGGAGATCACCATGCCTCCGCCTATTTACAGCGTG
species | Zea mays |
transcript | GRMZM5G866432_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGGACTTCCGGATCCCTGEST: gi|116818727|gb|EC861775.1|EC861775
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTG
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG ATGGAACTTCAGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTEST: gi|149112945|gb|EE191470.2|EE191470
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTEST: gi|148961850|gb|EE012633.2|EE012633
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
EST: TGCATTTTCATGTACATTGG GGGGAACTTCCGGATCCCTGAGGGGTCACTCCATCTGCCTGCCATGCCCCTEST: gi|110952595|gb|EE172647.1|EE172647
genomic: TGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
EST: ATGTACATTGG GTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTEST: gi|148931606|gb|EC874722.2|EC874722
genomic: ATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGAACTTCCGGGATCC-TGAGGCGTEST: gi|211385957|gb|FL328277.1|FL328277
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGG-ATCCCTGAGGCGT
EST: CGCGTGCTAGTGCSCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTEST: gi|148947485|gb|EC892931.2|EC892931
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GGTGAGA-CTTCCGGATCCCTGAGGCGTEST: gi|149044668|gb|EE047641.2|EE047641
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagG-TG-GAACTTCCGGATCCCTGAGGCGT
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTEST: gi|148962390|gb|EE013236.2|EE013236
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTEST: gi|148944915|gb|EC890074.2|EC890074
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGGACTTTCGGATCCCTGAGGCGEST: gi|149096166|gb|EE181863.2|EE181863
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCG
EST: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGG GTGGGACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
genomic: CGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgag ... tcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCT
cctgtgtgttcaaaaccgggatgtgagctcagctttgctcccttctcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTTGTGAAGTCAGCATGGGAGATCACCATGCCTCCGCCTATTTACAGCGTG
ctcagctttgctccct CT-rich tract
ttcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgagatcatacgctggcagtaagcagaacaaccatctgcctgtgtgttcaaaaccgggatgtgagctcagctttgctcccttctcttttccagGTGGAACTTCCGGATCCCTGAGGCGTCACTCCATCTGCCTGCCATGCCCCTTGTGAAGTCAGCATGGGAGATCACCATGCCTCCGCCTATTTACAGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA