1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactttagttcagtgatggaacagacactcgttcttctccatttggatcttctttttcccatctgatatatatcatttctaaaatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
species | Zea mays |
transcript | GRMZM5G856598_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAG GAGATTGCCCCACAATATGCTGGAGTCCTACATGEST: gi|32859895|gb|CD999576.1|CD999576
genomic: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
EST: GGTTTCTTAGTAAATCTACAG GAGATTGCCCCACAATATGCTGGAGTCCTACATGEST: gi|7145129|gb|AW506610.1|AW506610
genomic: GGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
EST: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAG GAGATTGCCCCACAATATGCTGGAGTCCTACATGEST: gi|32921298|gb|CF026110.1|CF026110
genomic: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
EST: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAG GAGATTGCCCCACAATATGCTGGAGTCCTACATG
genomic: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
tccatttggatcttctttttcccatctgatatatatcatttctaaaatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
ttctaaa putative branch site (score: 90)
atatatatcatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttagttcagtgatggaacagacactcgttcttctccatttggatcttctttttcccatctgatatatatcatttctaaaatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA