1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctaattgaaagtaaaaaaaatagctgggtatgttgataggcttttgtgttaaatcgtcttggtgacttaatggtgttatacatgtgtttttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAACACCAGTTTGTGGCATGAAGAGCTAGTTGATATTCCTTTACAGCGGAATG
species | Zea mays |
transcript | GRMZM5G849959_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG GCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAACEST: gi|74241159|gb|DT649073.1|DT649073
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAAC
EST: AGTTTCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG GCTCGATATTTTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGGTAATCAAEST: gi|113845654|gb|DW957590.1|DW957590
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGA-GTAATCAA
EST: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGT-CCAAAAGTACTG GCTCGATANATTTCAGAGGAAGTGEST: gi|76289857|gb|DV029425.1|DV029425
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTG
EST: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG GCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAACEST: gi|166444165|gb|EG132079.1|EG132079
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAAC
EST: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG GCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAAEST: gi|78110343|gb|DV528755.1|DV528755
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAA
EST: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG GCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAAC
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAAC
tgtgttaaatcgtcttggtgacttaatggtgttatacatgtgtttttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAACACCAGTTTGTGGCATGAAGAGCTAGTTGATATTCCTTTACAGCGGAATG
acttaat putative branch site (score: 85)
tgtttttc putative PPT
tttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaattgaaagtaaaaaaaatagctgggtatgttgataggcttttgtgttaaatcgtcttggtgacttaatggtgttatacatgtgtttttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAACACCAGTTTGTGGCATGAAGAGCTAGTTGATATTCCTTTACAGCGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - -aaaaaaa
- - - - - - - - - - - agctggg
- - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg