1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattgccatctgctcaatcatttgctaaacatgcacaatattatgtggaggtactaataactggatttactttttctccccacccgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTAAGGCGAAGAAGAAGAAAAAGGTGCAGAGGGGGGCGTGCTCCATTTTGT
species | Zea mays |
transcript | GRMZM5G846811_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTA AACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTEST: gi|32911002|gb|CF015814.1|CF015814
genomic: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTAgtattgccat ... cgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
EST: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTA AACGTGAAGGGCGTCTTTGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTEST: gi|116814412|gb|EC856959.1|EC856959
genomic: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTAgtattgccat ... cgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
EST: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTA AACGTGAAGGGCGTCTTCGATGCGGCGGTAAAGGTTGTGCTGCAGCCGCCTEST: gi|32943777|gb|CF048596.1|CF048596
genomic: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTAgtattgccat ... cgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
EST: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTA AACGTGAAGGGCGTCTTTGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTEST: gi|13490994|gb|BG517758.1|BG517758
genomic: AGCAAATAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTAgtattgccat ... cgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
EST: TAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTA AACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
genomic: TAGGCGCTCCATACTACATCGAATGCAGCTCGAAGACCCAACTAgtattgccat ... cgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
attatgtggaggtactaataactggatttactttttctccccacccgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTAAGGCGAAGAAGAAGAAAAAGGTGCAGAGGGGGGCGTGCTCCATTTTGT
taataac putative branch site (score: 724)
tttactttttctcccc putative PPT
atttacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgccatctgctcaatcatttgctaaacatgcacaatattatgtggaggtactaataactggatttactttttctccccacccgaatttcagAACGTGAAGGGCGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTAAGGCGAAGAAGAAGAAAAAGGTGCAGAGGGGGGCGTGCTCCATTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA