Sequence
atgc intronic sequence ATGC exonic sequencegtactcacttttctgtactataaacactggtctcattagtgaagctttgatcagctgccattgctccttcaaggcatcgttgtgaatattggttctggaacttctgatatactttgtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G846548_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 3'ss of exon 6
gtactcacttttctgtactataaacactggtctcattagtgaagctttgatcagctgccattgctccttcaaggcatcgttgtgaatattggttctggaacttctgatatactttgtctagtcagcatatcagt-gtctata-------tttattttctgttctttctttcccaccagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG
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-----------------------------gtgtca-----aattctcttgctaactcgaataggcaatgcca--tcttattgccattgatagtttgtttactgatgagataacttgcttggtcagtattttatttgtctatagggtgtactaattctttgtgctttcacttttcccagGGATCTAACCTTGATAGCAATGCTAAAATGTGGCGCCTAGTTGCAGACTTTATGAATGACCTTG
upper sequence: GRMZM5G846548_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G13010.1 (Glycine max), 3'ss of exon 2
gtactcacttttctgtactataaacactggtctcattagtgaa---gctttgatc--agctgccat-tgctccttcaaggc--atcgttgtgaatattggttctggaacttctgatatactt-tgtctagtcagc---atatcagtgtctatatttattttc-tgttctttctttcccaccagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG
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------gtctgtgtctctcatacaaacatgttcctttatcttacttattttgaactgaattgcgaagtactagctctatgcggactgtcatatac-ttggattggcatatgctgattctctcctatctaatgattctgatttttttaattatatttttctttatcttgtcccatctgttgcagGGATCAAATCTTGATAGCTATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTTG
upper sequence: GRMZM5G846548_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA01G07190.3 (Glycine max), 3'ss of exon 6
gtactcacttttctgtactataaacactggtctcattagtgaagctttgatc-agctgc-cattgctccttcaaggcatcgttgtgaatattggttctggaactt-ctgatatact-ttgtctagtcagcat--atcagtgtctatatttattttctgttctttctttcccac------cagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG
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--gtctgcttctctcatacaaacatgttcctttatcttattaattttgaactgaaatgtgcaatactagctctatgcagactgtcatatacttggattggcatatgctgtttctctcttatctaatgattttgaaataatttttgaattatatttctctttgtcttgtcccatatgttgcagGGATCAAATCTTGATAGCAATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTAG
upper sequence: GRMZM5G846548_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 5
gtactcacttttctgtactataaacactggtctcattagtgaagctttgatcagctgccattgctccttcaaggcatcgttgtgaatattggttctggaacttctgatatactttgtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG
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------------------------------------------------gtgcctatgtagcagattcttccca--atcataatacacatcgattct----cttcccttttctttaag--atttagattggttacgttcttatttaatgggaactgttctgttctt--cagGGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88755251|gb|DY539392.1|DY539392EST: TGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAG GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTT
genomic: TGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcactt ... ttcccaccagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG
tctatatttattttct CT-rich tract
tatatttattttctgt TA-rich tract