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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttgacaacagcgtcaacgagctcaaaaatgaaaataatgccttcccccagttttcatgataatgaaaattttcagatccatttatggcattttgtttaactcagcttcctgattgttttgttgttggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGTGAGTGGGATGAATTTGAGTGGTCCCAGCGAGCTATCCATATTAGTGTCA

Basic information

species Zea mays
transcript GRMZM5G846339_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846339_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g01760.1 (Oryza sativa), 3'ss of exon 6
gtacttttgacaacagcgtcaacgagctcaaaaatgaaaataatgccttcccccagttttcatgataatgaaaattttcagatccatttatggcattttgtttaactca-gcttcctgattgttttgttgttg-gtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGTGAGTGGGATGAATTTGAGTGGTCCCAGCGAGCTATCCATATTAGTGTCA
|||   |||     | | | |    ||| || ||  |||||  |||| ||||| |||||   | ||        ||||||| || ||  ||  |||||  || ||||||      |||||  ||||||||||  || |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||  | ||||| |||||||| |||| ||
gtaacgttgttg-taactttagtttgcttaacaactaaaatgctgccatcccc-agtttgtttaattt----gcttttcag-tctat--atcccatttcattaaactcacagggtctgatcattttgttgttccgttctgcagTTCTCTGACAATTTTGCTATTCTGTTGTTCCATTATGATGGTCGGGTGAGTGAGTGGGACGAGTTTGAGTGGTCGAAACGAGCCATCCATATAAGTGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76017486|gb|DT944656.1|DT944656
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
EST: gi|149004827|gb|EE039332.2|EE039332
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCTNGT-ATTCCACTATGATGGCCGGGTGAG
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCT-GTTATTCCACTATGATGGCCGGGTGAG
EST: gi|76915578|gb|DV166043.1|DV166043
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
EST: gi|32927854|gb|CF032666.1|CF032666
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
EST: gi|149112888|gb|EE295684.2|EE295684
EST:     TTACTGTTGGAGTTGAGCAGAGAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
EST: gi|44682283|gb|CK787331.1|CK787331
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
EST: gi|149070557|gb|EE158959.2|EE158959
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCT
EST: gi|148950258|gb|EC895810.2|EC895810
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGT
EST: gi|148965790|gb|EE016673.2|EE016673
EST:     TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG                         TTTTCTGACAATTTTGCTATTCT
genomic: TTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAGgtacttttga ... ggtgctgcagTTTTCTGACAATTTTGCTATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatggcattttgtttaactcagcttcctgattgttttgttgttggtgctgcagTTTTCTGACAATTTTGCTATTCTGTTATTCCACTATGATGGCCGGGTGAGTGAGTGGGATGAATTTGAGTGGTCCCAGCGAGCTATCCATATTAGTGTCA
                          tcctgat  putative branch site (score: 3)
        attttgtttaa  TA-rich tract