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gttagtcactgatttataataaatcatgttactacgcaaacaattgttcatgataataatataaaagtggatttgttttctcaagtttttcgttgacactttcttttatcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCATATCAG
species | Zea mays |
transcript | GRMZM5G846198_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTEST: gi|32850563|gb|CD990244.1|CD990244
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGT
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTAEST: gi|32834967|gb|CD974645.1|CD974645
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTA
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCEST: gi|32835266|gb|CD974944.1|CD974944
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACC
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTEST: gi|116823777|gb|EC867342.1|EC867342
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGT
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCATATCAGEST: gi|32850558|gb|CD990239.1|CD990239
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCATATCAG
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTAEST: gi|67022576|gb|CO451325.1|CO451325
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTA
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCATATCAGEST: gi|32850631|gb|CD990312.1|CD990312
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCATATCAG
EST: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAA GGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTA
genomic: CATTCTGTGATAACAACAAGGATATGGATGGTTTTCGATTTTGGAAGCAAgttagtcact ... tcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTA
aaagtggatttgttttctcaagtttttcgttgacactttcttttatcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCATATCAG
cgttgac putative branch site (score: 4)
cactttcttttatcct CT-rich tract
tttcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtcactgatttataataaatcatgttactacgcaaacaattgttcatgataataatataaaagtggatttgttttctcaagtttttcgttgacactttcttttatcctctgaagGGTTTTTGGAAAGATCATCTGCGAGGAAGACCGTACCATATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA