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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtatgccgctgctcaacagactttttgatggaagatctgcaatcatttttgtggattgcatttacactcttttttttttgcctttttgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG

Basic information

species Zea mays
transcript GRMZM5G845755_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G845755_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g02350.1 (Oryza sativa), 3'ss of exon 7
gtaaagtatgccgctgctcaacagactttttgatggaagatctgcaatcatttttgtggattgcatttacactcttttttttttgcctttttgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG
||| | |      |   |  | |     |   ||| |||| ||  | |  ||  | || |||  | ||      |||||||||            ||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||| ||||| || |  |||
gtata-tgaattacaatt--atatgtgatgcaatgcaagacctctagtt-ttaatatgaattaaaattttgacatttttttttcat---------atgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6465600|gb|AW191195.1|AW191195
EST:     -ACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|5846756|gb|AI999839.1|AI999839
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|32846294|gb|CD985975.1|CD985975
EST:     ACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: ACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|194717129|gb|FK934282.1|FK934282
EST:     GTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: GTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|29945847|gb|CB815850.1|CB815850
EST:     AGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|60350778|gb|DN217751.1|DN217751
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|94476026|gb|EB704984.1|EB704984
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|61117730|gb|DN558691.1|DN558691
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|60354727|gb|DN221700.1|DN221700
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|32849734|gb|CD989415.1|CD989415
EST:     ACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATACAGACAACCAACACCT
genomic: ACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|4609748|gb|AI600587.1|AI600587
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|61117733|gb|DN558694.1|DN558694
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|61117731|gb|DN558692.1|DN558692
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|113626902|gb|DW790797.1|DW790797
EST:     TTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: TTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|113860692|gb|DW979642.1|DW979642
EST:     CTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAAAGCAGACAACCAACACCT
genomic: CTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|61117732|gb|DN558693.1|DN558693
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT
EST: gi|148990947|gb|EE032376.2|EE032376
EST:     AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAG                         GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACCCCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTCGAAGCCCTTGTTGGAAGgtaaagtatg ... tgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatttttgtggattgcatttacactcttttttttttgcctttttgggatgcagGCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG
                 catttacactcttttt  CT-rich tract
                        actctttttttttt  TA-rich tract