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...aatatattaatttgctgctcaaagttaattgtttgctccaatcacttctagtaagtagtaacagaggctaagcacttcatttttatttcacatatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCAACTACTG
species | Zea mays |
transcript | GRMZM5G844173_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842384|gb|CD982065.1|CD982065
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGTACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|148956314|gb|EC902116.2|EC902116
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842680|gb|CD982361.1|CD982361
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842398|gb|CD982079.1|CD982079
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842301|gb|CD981982.1|CD981982
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842595|gb|CD982276.1|CD982276
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842361|gb|CD982042.1|CD982042
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842489|gb|CD982170.1|CD982170
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32922209|gb|CF027021.1|CF027021
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32923012|gb|CF027824.1|CF027824
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32842370|gb|CD982051.1|CD982051
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32841992|gb|CD981673.1|CD981673
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCEST: gi|32841997|gb|CD981678.1|CD981678
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
genomic: GACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata ... catatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
ttctagtaagtagtaacagaggctaagcacttcatttttatttcacatatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCAACTACTG
tagtaac putative branch site (score: 72)
ttcatttttatttcac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatattaatttgctgctcaaagttaattgtttgctccaatcacttctagtaagtagtaacagaggctaagcacttcatttttatttcacatatatcagGTGTAGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCCAACTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - -gctgctc
- - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - -ccaatca