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gtgagctatatttctgcctctttggtcgatgggaatttttttatatattttcagattactcttcggcacaccgttctgaactgatttcgacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT
species | Zea mays |
transcript | GRMZM5G843914_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAEST: gi|88756881|gb|DY541022.1|DY541022
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAEST: gi|101391015|gb|EB817443.1|EB817443
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAEST: gi|211041651|gb|FL024100.1|FL024100
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
tatattttcagattactcttcggcacaccgttctgaactgatttcgacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT
aactgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctatatttctgcctctttggtcgatgggaatttttttatatattttcagattactcttcggcacaccgttctgaactgatttcgacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT