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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatatcttctcgtagcttcttcgttcagtccttgtcatgcacgtgaagttgctcgggcaacagaatacttactgatcactgccactcatctccctctttgcattgtgacgcgcgcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA

Basic information

species Zea mays
transcript GRMZM5G836250_T03
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105896|gb|DV524314.1|DV524314
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACTTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|76282214|gb|DV021782.1|DV021782
EST:     CAGACATCAAG                         ATACCTAGGAGGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149085230|gb|EE174737.2|EE174737
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149056940|gb|EE156494.2|EE156494
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGGAGATCT
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCT
EST: gi|89759141|gb|DY688054.1|DY688054
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|93284534|gb|EB676798.1|EB676798
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|83279121|gb|DV943129.1|DV943129
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|50324976|gb|CO520102.1|CO520102
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAGGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|50327741|gb|CO522867.1|CO522867
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|89759142|gb|DY688055.1|DY688055
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCCACGAAGGGGACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149088446|gb|EE177549.2|EE177549
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTNCA-CGAAGGGAACGCCAAGAA
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGT-CAACGAAGGGAACGCCAAGAA
EST: gi|71768088|gb|DR966025.1|DR966025
EST:     CGCTCGACCCCTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149095912|gb|EE181574.2|EE181574
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|32838746|gb|CD978427.1|CD978427
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71770843|gb|DR968780.1|DR968780
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCTACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149085229|gb|EE174736.2|EE174736
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|148932776|gb|EE285437.2|EE285437
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAANGGGA-CGCCAAGAA
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAA-GGGAACGCCAAGAA
EST: gi|148929799|gb|EE285436.2|EE285436
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|32920564|gb|CF025376.1|CF025376
EST:     CGCTCGACCCTTCACTTGGCGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|88752752|gb|DY536893.1|DY536893
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71770842|gb|DR968779.1|DR968779
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149064612|gb|EE286483.2|EE286483
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71317307|gb|DR795338.1|DR795338
EST:     TTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: TTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|74244032|gb|DT651946.1|DT651946
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|110201016|gb|EC882913.1|EC882913
EST:     GCTTG-CCCTTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: GCTCGACCC-TTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|94476278|gb|EB705236.1|EB705236
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|50332538|gb|CO527664.1|CO527664
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71757120|gb|DR955057.1|DR955057
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149099889|gb|EE185942.2|EE185942
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATTTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttatatcttctcgtagcttcttcgttcagtccttgtcatgcacgtgaagttgctcgggcaacagaatacttactgatcactgccactcatctccctctttgcattgtgacgcgcgcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA

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