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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG

Basic information

species Zea mays
transcript GRMZM5G835213_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
---------gtaagca-ctgcctggctctcatctctcctccatttact-tgtcattgttgacattttagcagagtggcttgctacttgt-gcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
           | | | |||  ||  | |  | | |||     | ||| ||  |     ||||||||| | ||  ||  |  |||  || |    | || |    | |  || |      |  |   |   |||| ||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||||||
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G17200.2 (Glycine max), 3'ss of exon 6
----------gtaagcactgcctggct------ctcatctctcctccatttacttgtc-attgttgacattttagcagagtggcttgctacttgtgca-gtacatgacat------gtctatttaccagtttagcttggtaacttt-----------tgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
           ||  | ||  ||   |      |||||  ||  |  ||||  | ||  | |   || |||||    ||   ||  | ||| ||      ||  ||| ||       | | | ||  |   |    |||||| | |           | ||| ||||| ||||| |||||||| ||||| ||||| || ||||| || ||||| |||||||||||  |||| ||||||
gtaagtttttatataccctctctatttttccttctcattgctattttattttgtggtttacttcagatattttgttggaagtgca-gatacctgaatgtatatgtgaaatcaattcatatttgtagtatcatgatatggtaattatggtatgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA17G05530.4 (Glycine max), 3'ss of exon 7
gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
              | ||  |  |  |  ||||     |  |  | |     |||| | ||  || |  || ||    ||| | |    ||   ||||| || | ||| ||||| |     || ||| ||||| ||||| |||||||| ||||| ||||| || ||||| || ||||| |||||||||||  |||| ||||||
--------------gatcaaaattg-cggccatcctgctaccgctat-agtgttttgggaggctgacc-gccac----gcactgctatcca---ctattgactactttggcttgttgg---ttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G01230.1 (Glycine max), 3'ss of exon 6
gtaagcactgcctggctctcatctctcctccatttac-ttgtcattgttgacattttagcagagtggcttgc-tacttgtgcagtacatgacatgtctatttaccagtttagcttgg-taacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
                               ||||    ||||     ||| | ||   | | |||   |    | |||||  |   |    |  |    | | || ||||  ||   |  |   | |||||||||||||||||||||||| ||||| || || || || || || ||||| |||||||| ||| | || || |||
-----------------------------atatttgtactgtctcccatgatagttgtacggtgtgttctatacaattgtgttg-gtaacttagcttggctcatcattttattttttctggcggctccagAGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAG

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G54080.2 (Arabidopsis thaliana), 3'ss of exon 6
-------------------------------------------------gtaagcactgcctggctctcatctctcctccatttacttgtcattgt---tgaca-------ttttagcagagtggcttgct-acttgtgcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
                                                   | | |   | ||   | || ||    |  |   |  | ||| | |   | |||        ||||        ||||  |   ||   ||||  || | |  ||| || |     |     | ||   | ||  || || || || || ||||||||||||||||| ||||| || ||||| |||||||||||||| ||| | || ||||||
gtaagttcttgtgcttggtcttctgattttagttactagctggttacaaaaatgaaaatcttgttacacaactacggtgtacgcatatatcactatgtgttacaagattttctttaatgattaagcttatttgtttaaacagtctatcaga-atct-ttgatttaatatctatagTTCTTATTATAGGGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAG

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
|||||| | |  ||     |||  |   |   ||| ||| |     ||||  || |    || |  ||| |  |||||| |      |||   | |    | | || |    ||||| |      ||||||||||||||||||||||| |||||||| || || || || || ||||| |||||||||||| |||||||||||
gtaagctccgtttg-----catggcctttttgttttcttct-----ttgaatttgtgattgattaactttc--cttgtgtatgttgagactaatttg---atccgtgt--tctggtatc------agAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 3'ss of exon 6
gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
                    || |   ||| | |   | | | || || |   || |    ||     |  |||||     ||     |       ||  |  |  |||  || ||     ||  |||||||| |||||||||||||| ||||| || || || || ||||||||||| |||||||||||| | || || |||
------------------gaatgtggactc-actagttagaccttatt-atgattaaatgaagctatcttttactttcattgtcggaaa-------atagatgacattatgtttgtgctggttttagAGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361403|gb|CD445760.1|CD445760
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71328163|gb|DR800724.1|DR800724
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|24934275|gb|CA452493.1|CA452493
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|76916928|gb|DV166611.1|DV166611
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71449843|gb|DR830893.1|DR830893
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|50328157|gb|CO523283.1|CO523283
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149005281|gb|EE039830.2|EE039830
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71436375|gb|DR817425.1|DR817425
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71764597|gb|DR962534.1|DR962534
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|148944552|gb|EC889676.2|EC889676
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149096874|gb|EE182668.2|EE182668
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|22546594|gb|BU098905.1|BU098905
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71428352|gb|DR809402.1|DR809402
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|148965511|gb|EE016330.2|EE016330
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|93013850|gb|EB639370.1|EB639370
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71760191|gb|DR958128.1|DR958128
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|93012834|gb|EB638354.1|EB638354
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|50322712|gb|CO517838.1|CO517838
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGT
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGT
EST: gi|149098619|gb|EE184624.2|EE184624
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|22545671|gb|BU098030.1|BU098030
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|148938880|gb|EC883234.2|EC883234
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|94475248|gb|EB704206.1|EB704206
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71324258|gb|DR798829.1|DR798829
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149111090|gb|EE294586.2|EE294586
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|148972836|gb|EE023824.2|EE023824
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|29544652|gb|CB605032.1|CB605032
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|148961382|gb|EE012120.2|EE012120
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|211492468|gb|FL234470.1|FL234470
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|211492467|gb|FL234469.1|FL234469
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149103764|gb|EE289171.2|EE289171
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149104833|gb|EE290297.2|EE290297
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149095084|gb|EE180690.2|EE180690
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71431558|gb|DR812608.1|DR812608
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149073417|gb|EE161721.2|EE161721
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         -G--G-T----T-ATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71317247|gb|DR795307.1|DR795307
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|194717059|gb|FK934212.1|FK934212
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71773943|gb|DR971831.1|DR971831
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|5268356|gb|AI770320.1|AI770320
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149079527|gb|EE168509.2|EE168509
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71756632|gb|DR954569.1|DR954569
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149104834|gb|EE290298.2|EE290298
EST:     ACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: ACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149004891|gb|EE039402.2|EE039402
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|149084914|gb|EE174423.2|EE174423
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|32866442|gb|CF006124.1|CF006124
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
EST: gi|71431559|gb|DR812609.1|DR812609
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtgcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG
                                        tggtaac  putative branch site (score: 2)
                                              cttttgc  CT-rich tract
                     tctattta  TA-rich tract