Sequence
atgc intronic sequence ATGC exonic sequencegtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatgacacctatgcatcagGTATCCTTCAATTGTTTTTGTTGGTGATACCTACACCTATTTTGCTGGAATGGCTTTGGCTGTGATAGGAATTTTGGGACATTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G827205_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g46640.1 (Oryza sativa), 3'ss of exon 6
gtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatg-acacctatgcatcagGTATCCTTCAATTGTTTTTGTTGGTGATACCTACACCTATTTTGCTGGAATGGCTTTGGCTGTGATAGGAATTTTGGGACATTTCAG
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gtaaggaccatgggaagcatgc-acatttatttaaagaaaaaagttcttttgctttgtttcag---aaagaatgactttgtatgtgtgtgtatcagGTATCCTTCATCTGTTTTCGTTGGTGATACCTACACCTATTTTTCTGGAATGGCATTGGCTGTGGTGGGAATTTTGGGTCATTTCAG
upper sequence: GRMZM5G827205_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G34640.1 (Glycine max), 3'ss of exon 6
gtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatgacacctatgcatcagGTATCCTTCAATTGTTTTTGTTGGTGATACCTACACCTATTTTGCTGGAATGGCTTTGGCTGTGATAGGAATTTTGGGACATTTCAG
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gtattcactg-atgtatcattatcatttcatttgaaaccgtgtttcacatgatagagtagtttt----accaacagtatggtcttcttgttctagGTATCCCTCTTCAGTTTTTGTTGGTGATACATATACATACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAG
upper sequence: GRMZM5G827205_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G16320.1 (Glycine max), 3'ss of exon 6
gtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatgacacctatgcatcagGTATCCTTCAATTGTTTTTGTTGGTGATACCTACACCTATTTTGCTGGAATGGCTTTGGCTGTGATAGGAATTTTGGGACATTTCAG
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gtattcac--tgatgtat-catt--atcatttcatttgaaaccttttttgatagagtagttttactt-----acagtatggtcttcttgttccagGTATCCCTCTTCAGTTTTTGTTGGTGATACATATACATACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAG
upper sequence: GRMZM5G827205_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S281_35V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------------------------------------------------------gtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatgacacctatgcatcagGTATCCTTCAATTGTTTTTGTTGGTGATACCTACACCTATTTTGCTGGAATGGCTTTGGCTGTGATAGGAATTTTGGGACATTTCAG
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gtaagcttgagtgattatctcgatcaattacgttgttccatgataaggtcttttgtagaattgcatttgattgtcatgaatcctctctgattttatgttcattggaatggctcgtgtatct-ttgactgctgagtcaaattttcaaatgacttgaactccggaatg-tcgggaaatattcgca---gGTATCCTTCATCAGTGTTTGTTGGTGATACGTACACCTATTTTGCGGGAATGGCTTTGGCAGTAGTAGGCATCCTTGGTCACTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttttatttacctttttttttctttggagaaaaatcatgacacctatgcatcagGTATCCTTCAATTGTTTTTGTTGGTGATACCTACACCTATTTTGCTGGAATGGCTTTGGCTGTGATAGGAATTTTGGGACATTTCAG
tatttacctttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatgacacctatgcatcagGTATCCTTCAATTGTTTTTGTTGGTGATACCTACACCTATTTTGCTGGAATGGCTTTGGCTGTGATAGGAATTTTGGGACATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA