1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagttacttcagttcatcgcttattagcgtaacatttttttcccgaaattgtttgtgtacccagttacccacacgcacgactgaggaaaacaaataatcatgattgtgatgcagGGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAGCAAGGTCTGGAGAAGACGGGGAAGTTCAACATCGTGTCCAAGGACAACG
species | Zea mays |
transcript | GRMZM5G826838_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAA GGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAGEST: gi|78090392|gb|DV518766.1|DV518766
genomic: CCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAAgtgagttact ... tgtgatgcagGGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAG
EST: AGCCAGG-TATTGCACAGTACTCCCAGCTGATCCGCCTTGGC-TTGAA GGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGTTTCTGAAGEST: gi|76014719|gb|DT941889.1|DT941889
genomic: AGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAAgtgagttact ... tgtgatgcagGGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAG
EST: CCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAA GGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAGEST: gi|40335582|gb|CK369652.1|CK369652
genomic: CCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAAgtgagttact ... tgtgatgcagGGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAG
EST: CCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAA GGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAG
genomic: CCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAAgtgagttact ... tgtgatgcagGGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAG
cccagttacccacacgcacgactgaggaaaacaaataatcatgattgtgatgcagGGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAGCAAGGTCTGGAGAAGACGGGGAAGTTCAACATCGTGTCCAAGGACAACG
aaaacaaataatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttacttcagttcatcgcttattagcgtaacatttttttcccgaaattgtttgtgtacccagttacccacacgcacgactgaggaaaacaaataatcatgattgtgatgcagGGTTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGACGGTTCTGAAGCAAGGTCTGGAGAAGACGGGGAAGTTCAACATCGTGTCCAAGGACAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA