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...atattcatattagtaatggggactgatgtttctgatgtcctatgcaatatttcattgccatgccaaatatgcactttaaataactgagccgtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTAGTCCCAG
species | Zea mays |
transcript | GRMZM5G823484_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|67013225|gb|CO441974.1|CO441974
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|60356127|gb|DN223100.1|DN223100
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|9566477|gb|BE475986.1|BE475986
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|91878412|gb|EB408369.1|EB408369
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|32802642|gb|CD954878.1|CD954878
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAEST: gi|37392304|gb|CF633401.1|CF633401
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTA
EST: AAACAGTCC-TTTTGACTNGAGCTG GGAAATCGC-TGCATAAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATEST: gi|76012574|gb|DT939744.1|DT939744
genomic: AAACAGTCCTTTTTGACT-GAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCAT-AAGGGGCTGCTTAATCATTGGCAGAAGTTCACAT
EST: TTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|37377535|gb|CF625382.1|CF625382
genomic: TTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: GTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|32804847|gb|CD957083.1|CD957083
genomic: GTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG NGAAATCGCTTGCATAAGGGGCTACTTAEST: gi|71434510|gb|DR815560.1|DR815560
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTA
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|60396240|gb|DN229109.1|DN229109
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTEST: gi|5847426|gb|AW000505.1|AW000505
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
genomic: CATTCAGTGCCCTTGAAGGCCTCAACAAACAGTCCTTTTTGACTGAGCTGgtatgtttcc ... gtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTT
aatatttcattgccatgccaaatatgcactttaaataactgagccgtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTAGTCCCAG
aaataac putative branch site (score: 154)
tgctttt putative PPT
actttaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattcatattagtaatggggactgatgtttctgatgtcctatgcaatatttcattgccatgccaaatatgcactttaaataactgagccgtgcttttagGGAAATCGCTTGCATAAGGGGCTGCTTAATCATTGGCAGAAGTTCACATTTAGTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -ttcatat
- - - - - - - - - - - ctgatgt
- - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataac